Evidence map›Paper›PMID 32661358›Full record

ArticleScientific reports2020

Transcriptomic analysis of Dubas bug (Ommatissus lybicus Bergevin) infestation to Date Palm.

Abdul Latif Khan, Sajjad Asaf, Adil Khan, Arif Khan, Muhammad Imran, Ahmed Al-Harrasi, In-Jung Lee, Ahmed Al-Rawahi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Calcium Signaling in Plant-Insect Interactions.Plants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Abdul Latif Khan *Natural and Medical Sciences Research Center, University of Nizwa, 616, Nizwa, Oman. latifepm78@yahoo.co.uk.
Sajjad Asaf *Natural and Medical Sciences Research Center, University of Nizwa, 616, Nizwa, Oman.
Adil Khan *Natural and Medical Sciences Research Center, University of Nizwa, 616, Nizwa, Oman.
Arif KhanGenomics Group, Faculty of Biosciences and Aquaculture, Nord University, 8049, Bodø, Norway.
Muhammad ImranSchool of Applied Biosciences, Kyungpook National University, Daegu, South Korea.
Ahmed Al-HarrasiNatural and Medical Sciences Research Center, University of Nizwa, 616, Nizwa, Oman. aharrasi@unizwa.edu.om.
In-Jung LeeSchool of Applied Biosciences, Kyungpook National University, Daegu, South Korea.
Ahmed Al-RawahiNatural and Medical Sciences Research Center, University of Nizwa, 616, Nizwa, Oman.
University of Nizwa · OMKyungpook National University · KRNord University · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Date palm (Phoenix dactylifera L.) and its fruit possess sociocultural, health and economic importance in Middle East. The date palm plantations are prone to Dubas bug (DB; Ommatissus lybicus DeBergevin; Homoptera: Tropiduchidae) attacks that severely damages the tree's growth and reduces fruit production. However, the transcriptome related datasets are not known to understand how DB activates physiological and gene regulatory mechanisms during infestation. Hence, we performed RNA-Seq of leaf infected with or without DB to understand the molecular responses of date palm seedlings. Before doing that, we noticed that DB infestation significantly increase superoxide anion and malondialdehyde production to two-folds as compared to healthy control. Stress-responsive genes such as proline transporter 2, NADP-dependent glyceraldehyde and superoxide dismutase were found significantly upregulated in infected seedlings. The infection repercussions were also revealed by significantly higher contents of endogenous phytohormonal signaling of jasmonic acid (JA) and salicylic acid (SA) compared with control. These findings persuaded to dig out intrinsic mechanisms and gene regulatory networks behind DB infestation to date palm by RNA-Seq analysis. Transcriptome analysis revealed upregulation of 6,919 genes and down-regulation of 2,695 genes in leaf during the infection process. The differentially expressed genes were mostly belongs to cellular functions (calcium and MAPK), phytohormones (auxin, gibberellins, abscisic acid, JA and SA), and secondary metabolites (especially coumarinates and gossypol). The data showed that defense responses were aggravated by gene networks involved in hypersensitive responses (PAR1, RIN4, PBS1 etc.). In conclusion, the results revealed that date palm's leaf up-regulates both cellular and phytohormonal determinants, followed by intrinsic hypersensitive responses to counter infestation process by Dubas bug.

Indexed as

AnimalsGene Expression ProfilingGene Expression Regulation, PlantHemipteraInfectionsPhoeniceaePlant Growth RegulatorsPlant LeavesSeedlingsTranscriptomePlant Growth Regulators

Identifiers

PMID32661358
PMCPMC7359322
OpenAlexW3040706253

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.