Evidence map›Paper›PMID 32661308›Full record

ArticleScientific reports2020

MLPA and DNA index improve the molecular diagnosis of childhood B-cell acute lymphoblastic leukemia.

Chih-Hsiang Yu, Tze-Kang Lin, Shiann-Tarng Jou, Chien-Yu Lin, Kai-Hsin Lin, Meng-Yao Lu, Shu-Huey Chen, Chao-Neng Cheng, Kang-Hsi Wu, Shih-Chung Wang and 10 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

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  8. Prognostic and Pharmacotypic Heterogeneity of Hyperdiploidy in Childhood ALL.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2023
    Article
  9. Association ofBlood cell therapy · 2023
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  13. JCO precision oncology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 2 countries.

Chih-Hsiang Yu *Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan.
Tze-Kang Lin *Graduate Institute of Clinical Medicine, National Taiwan University, Taipei, Taiwan.
Shiann-Tarng JouDepartment of Pediatrics, National Taiwan University Hospital and National Taiwan University College of Medicine, Taipei, Taiwan.
Chien-Yu LinInstitute of Statistical Science Academia Sinica, Taipei, Taiwan.
Kai-Hsin LinDepartment of Pediatrics, National Taiwan University Hospital and National Taiwan University College of Medicine, Taipei, Taiwan.
Meng-Yao LuDepartment of Pediatrics, National Taiwan University Hospital and National Taiwan University College of Medicine, Taipei, Taiwan.
Shu-Huey ChenDepartment of Pediatrics, Taipei Medical University-Shuang Ho Hospital, Taipei, Taiwan.
Chao-Neng ChengDepartment of Pediatrics, National Cheng Kung University Hospital, Tainan, Taiwan.
Kang-Hsi WuDivision of Pediatric Hematology and Oncology, China Medical University Children's Hospital, Taichung, Taiwan.
Shih-Chung WangDepartment of Pediatrics, Changhua Christian Hospital, Changhua, Taiwan.
Hsiu-Hao ChangDepartment of Pediatrics, National Taiwan University Hospital and National Taiwan University College of Medicine, Taipei, Taiwan.
Meng-Ju LiDepartment of Pediatrics, National Taiwan University Hospital and National Taiwan University College of Medicine, Taipei, Taiwan.
Yu-Ling NiDepartment of Laboratory Medicine, National Taiwan University Hospital, Taipei, Taiwan.
Yi-Ning SuSofiva Genomics Co., Ltd, Taipei, Taiwan.
Dong-Tsamn LinDepartment of Pediatrics, National Taiwan University Hospital and National Taiwan University College of Medicine, Taipei, Taiwan.
Hsuan-Yu ChenInstitute of Statistical Science Academia Sinica, Taipei, Taiwan.
Christine J HarrisonLeukaemia Research Cytogenetics Group, Northern Institute for Cancer Research, Newcastle University, Newcastle-upon-Tyne, UK.
Chia-Cheng HungSofiva Genomics Co., Ltd, Taipei, Taiwan. double@sofivagenomics.com.tw.
Shu-Wha LinDepartment of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, Taiwan. mtshuwha@ntu.edu.tw.
Yung-Li YangDepartment of Pediatrics, National Taiwan University Hospital and National Taiwan University College of Medicine, Taipei, Taiwan. yangyl92@ntu.edu.tw.
National Taiwan University Hospital · TWGenomics Research Center, Academia Sinica · TWNational Taiwan University · TWInstitute of Statistical Science, Academia Sinica · TWChanghua Christian Hospital · TWChina Medical University Hospital · TWNational Cheng Kung University Hospital · TWNewcastle University · GBTaipei Medical University-Shuang Ho Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aneuploidy occurs within a significant proportion of childhood B-cell acute lymphoblastic leukemia (B-ALL). Some copy number variations (CNV), associated with novel subtypes of childhood B-ALL, have prognostic significance. A total of 233 childhood B-ALL patients were enrolled into this study. Focal copy number alterations of ERG, IKZF1, PAX5, ETV6, RB1, BTG1, EBF1, CDKN2A/2B, and the Xp22.33/Yp11.31 region were assessed by Multiplex Ligation-dependent Probe Amplification (MLPA). The MLPA telomere kit was used to identify aneuploidy through detection of whole chromosome loss or gain. We carried out these procedures alongside measurement of DNA index in order to identify, aneuploidy status in our cohort. MLPA telomere data and DNA index correlated well with aneuploidy status at higher sensitivity than cytogenetic analysis. Three masked hypodiploid patients, undetected by cytogenetics, and their associated copy number neutral loss of heterozygosity (CN-LOH) were identified by STR and SNP arrays. Rearrangements of TCF3, located to 19p, were frequently associated with 19p deletions. Other genetic alterations including iAMP21, IKZF1 deletions, ERG deletions, PAX5

Indexed as

Pathology, MolecularPrognosisAdolescentAneuploidyB-LymphocytesChildChild, PreschoolChromosome AberrationsDNA Copy Number VariationsDNA, NeoplasmFemaleHumansInfantMaleMultiplex Polymerase Chain ReactionPrecursor Cell Lymphoblastic Leukemia-LymphomaDNA, Neoplasm

Identifiers

PMID32661308
PMCPMC7359332
OpenAlexW3041027715

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.