Evidence map›Paper›PMID 32659037›Full record

ArticleChembiochem : a European journal of chemical biology2020

Multiparameter Kinetic Analysis for Covalent Fragment Optimization by Using Quantitative Irreversible Tethering (qIT).

Gregory B Craven, Dominic P Affron, Teresa Kösel, Tsz Lam M Wong, Zoë H Jukes, Chun-Ting Liu, Rhodri M L Morgan, Alan Armstrong, David J Mann

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Fragment-based covalent ligand discovery.RSC chemical biology · 2021
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Gregory B CravenDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.ORCID 0000-0003-3414-8348
Dominic P AffronDepartment of Chemistry, Imperial College London, Molecular Sciences Research Hub, White City Campus, Wood Lane, London, W12 0BZ, UK.
Teresa KöselDepartment of Chemistry, Imperial College London, Molecular Sciences Research Hub, White City Campus, Wood Lane, London, W12 0BZ, UK.
Tsz Lam M WongDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.ORCID 0000-0003-0325-1414
Zoë H JukesDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.ORCID 0000-0003-2981-8538
Chun-Ting LiuDepartment of Chemistry, Imperial College London, Molecular Sciences Research Hub, White City Campus, Wood Lane, London, W12 0BZ, UK.ORCID 0000-0003-3996-5064
Rhodri M L MorganDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.ORCID 0000-0002-9760-3638
Alan ArmstrongDepartment of Chemistry, Imperial College London, Molecular Sciences Research Hub, White City Campus, Wood Lane, London, W12 0BZ, UK.ORCID 0000-0002-3692-3099
David J MannDepartment of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.ORCID 0000-0003-3023-1734

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chemical probes that covalently modify cysteine residues in a protein-specific manner are valuable tools for biological investigations. Covalent fragments are increasingly implemented as probe starting points, but the complex relationship between fragment structure and binding kinetics makes covalent fragment optimization uniquely challenging. We describe a new technique in covalent probe discovery that enables data-driven optimization of covalent fragment potency and selectivity. This platform extends beyond the existing repertoire of methods for identifying covalent fragment hits by facilitating rapid multiparameter kinetic analysis of covalent structure-activity relationships through the simultaneous determination of K

Indexed as

AcrylamideCrystallography, X-RayCysteineFluorescent DyesHumansKineticsModels, MolecularMolecular StructurePhosphotransferasesStructure-Activity RelationshipThermodynamicsAcrylamideCysteineFluorescent DyesPhosphotransferasesCdk2covalent fragmentscovalent inhibition kineticselectrophile-sensitive inhibitionfragment-based drug discovery

Identifiers

PMID32659037
PMCPMC7754465

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.