Evidence map›Paper›PMID 32658972›Full record

ArticleBrain : a journal of neurology2020

SLC12A2 variants cause a neurodevelopmental disorder or cochleovestibular defect.

Alisdair McNeill, Emanuela Iovino, Luke Mansard, Christel Vache, David Baux, Emma Bedoukian, Helen Cox, John Dean, David Goudie, Ajith Kumar and 10 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Brain : a journal of neurology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  8. The role ofJournal of pharmaceutical analysis · 2023
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  10. 3' UTR Deletion ofGenes · 2023
    Article
  11. NKCC1 in human diseases: is theAmerican journal of physiology. Cell physiology · 2023
    Article
  12. Article
  13. New year, new genes.European journal of human genetics : EJHG · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. NKCC1 and KCC2: Structural insights into phospho-regulation.Frontiers in molecular neuroscience · 2022
    Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 12 institutions in 4 countries.

Alisdair McNeillDepartment of Neuroscience, University of Sheffield, Sheffield, UK.
Emanuela IovinoDepartment of Medical and Surgical Sciences, University of Bologna, Bologna, Italy.
Luke MansardLaboratory of Molecular Genetics, CHU Montpellier, University of Montpellier, Montpellier, France.
Christel VacheLaboratory of Molecular Genetics, CHU Montpellier, University of Montpellier, Montpellier, France.
David BauxLaboratory of Molecular Genetics, CHU Montpellier, University of Montpellier, Montpellier, France.
Emma BedoukianRoberts Individualized Medical Genetics Center, Children's Hospital of Philadelphia, Philadelphia, USA.
Helen CoxRegional Clinical Genetics Unit, Birmingham Women's and Children's Hospital NHS Foundation Trust, Mindelsohn Way, Birmingham, UK.
John DeanNorth of Scotland Genetics Service, Aberdeen Royal Infirmary, Foresterhill, Aberdeen, UK.
David GoudieEast of Scotland Regional Genetics Service, Level 6, Ninewells Hospital, Dundee, UK.
Ajith KumarClinical Genetics Unit, Great Ormond Street Hospital, Great Ormond Street, London, UK.
Ruth Newbury-EcobBristol Regional Genetics Service, St Michael's Hospital, Southwell Street, Bristol, UK.
Chiara FalleriniMedical Genetics, University of Siena, Siena, Italy.
Alessandra RenieriMedical Genetics, University of Siena, Siena, Italy.
Diego LopergoloMedical Genetics, University of Siena, Siena, Italy.
Francesca MariMedical Genetics, University of Siena, Siena, Italy.
Catherine BlanchetCentre of Reference for Genetic Sensory diseases, CHU Montpellier, University of Montpellier, Montpellier, France.
Marjolaine WillemsDepartment of Clinical Genetics, CHU Montpellier, University of Montpellier, Montpellier, France.
Anne-Francoise RouxLaboratory of Molecular Genetics, CHU Montpellier, University of Montpellier, Montpellier, France.
Tommaso PippucciMedical Genetics Unit, Polyclinic Sant'Orsola-Malpighi University Hospital, Bologna, Italy.
Eric DelpireDepartment of Anesthesiology, Vanderbilt University School of Medicine, Nashville, TN, USA.
Université de Montpellier · FRUniversity of Siena · ITAberdeen Royal Infirmary · GBBirmingham Women’s and Children’s NHS Foundation Trust · GBChildren's Hospital of Philadelphia · USGreat Ormond Street Hospital · GBIRCCS Azienda Ospedliero-Universitaria di Bologna Policlinico di Sant'Orsola · ITNinewells Hospital · GBSheffield Children's NHS Foundation Trust · GBSt Michael's Hospital · GBUniversity of Bologna · ITVanderbilt University · US

Funding

WNK-SPAK signaling in the Distal NephronR01DK093501 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Eric J Delpire, Paul A Welling · 2012 to 2026
$12.1M
OXGR1 in Renal Intercalated Cells, Salt Transport and Diuretic EfficacyR01DK110375 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Eric J Delpire, SUSAN MARIE WALL · 2017 to 2026
$6.7M
Department of Health [UK]NIDDK NIH HHS R01 DK093501NIDDK NIH HHS R01 DK110375Wellcome TrustWellcome Trust WT098051
6 · The paper itself

Abstract

The SLC12 gene family consists of SLC12A1-SLC12A9, encoding electroneutral cation-coupled chloride co-transporters. SCL12A2 has been shown to play a role in corticogenesis and therefore represents a strong candidate neurodevelopmental disorder gene. Through trio exome sequencing we identified de novo mutations in SLC12A2 in six children with neurodevelopmental disorders. All had developmental delay or intellectual disability ranging from mild to severe. Two had sensorineural deafness. We also identified SLC12A2 variants in three individuals with non-syndromic bilateral sensorineural hearing loss and vestibular areflexia. The SLC12A2 de novo mutation rate was demonstrated to be significantly elevated in the deciphering developmental disorders cohort. All tested variants were shown to reduce co-transporter function in Xenopus laevis oocytes. Analysis of SLC12A2 expression in foetal brain at 16-18 weeks post-conception revealed high expression in radial glial cells, compatible with a role in neurogenesis. Gene co-expression analysis in cells robustly expressing SLC12A2 at 16-18 weeks post-conception identified a transcriptomic programme associated with active neurogenesis. We identify SLC12A2 de novo mutations as the cause of a novel neurodevelopmental disorder and bilateral non-syndromic sensorineural hearing loss and provide further data supporting a role for this gene in human neurodevelopment.

Indexed as

AdolescentAdultBilateral VestibulopathyChildChild, PreschoolFemaleHearing Loss, SensorineuralHumansInfantMaleMutationNeurodevelopmental DisordersSolute Carrier Family 12, Member 2Young AdultSLC12A2 protein, humanSolute Carrier Family 12, Member 2braincorticogenesisde novo mutationexomeneurodevelopmental disorder

Identifiers

PMID32658972
PMCPMC7447514
OpenAlexW3042308576

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.