Evidence map›Paper›PMID 32656931›Full record

ArticleEnvironmental microbiology2021

The substrate-dependent regulatory effects of the AfeI/R system in Acidithiobacillus ferrooxidans reveals the novel regulation strategy of quorum sensing in acidophiles.

Xue-Yan Gao, Chang-Ai Fu, Likai Hao, Xiu-Feng Gu, Rui Wang, Jian-Qiang Lin, Xiang-Mei Liu, Xin Pang, Cheng-Jia Zhang, Jian-Qun Lin and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Molecular Identification and Acid Stress Response of anInternational journal of molecular sciences · 2023
    Article
  8. Overexpression of quorum sensing genes inBiotechnology reports (Amsterdam, Netherlands) · 2023
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Xue-Yan GaoState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.ORCID 0000-0003-4228-8279
Chang-Ai FuState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
Likai HaoState Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, No. 99 Lincheng West Road, Guiyang, 550081, China.
Xiu-Feng GuState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
Rui WangState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
Jian-Qiang LinState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
Xiang-Mei LiuState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.ORCID 0000-0002-2908-184X
Xin PangState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
Cheng-Jia ZhangState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
Jian-Qun LinState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.
Lin-Xu ChenState Key Laboratory of Microbial Technology, Shandong University, No. 72 Binhai Road, Qingdao, 266237, China.ORCID 0000-0001-6620-6798
Shandong University · CNQingdao Binhai University · CNChinese Academy of Sciences · CN

Funding

National Natural Science Foundation of China 31570036National Natural Science Foundation of China 31570041National Natural Science Foundation of China 31872621National Natural Science Foundation of China 41877400The National Key Research and Development Project of China 2018YFC1802601The Project of Taishan Industry Leading Talent in Shandong Province LJNY201603The Startup Funding of the Chinese Academy of Sciences (2017-020)The State Key Laboratory of Microbial Technology Foundation M2017-01
6 · The paper itself

Abstract

A LuxI/R-like quorum sensing (QS) system (AfeI/R) has been reported in the acidophilic and chemoautotrophic Acidithiobacillus spp. However, the function of AfeI/R remains unclear because of the difficulties in the genetic manipulation of these bacteria. Here, we constructed different afeI mutants of the sulfur- and iron-oxidizer A. ferrooxidans, identified the N-acyl homoserine lactones (acyl-HSLs) synthesized by AfeI, and determined the regulatory effects of AfeI/R on genes expression, extracellular polymeric substance synthesis, energy metabolism, cell growth and population density of A. ferrooxidans in different energy substrates. Acyl-HSLs-mediated distinct regulation strategies were employed to influence bacterial metabolism and cell growth of A. ferrooxidans cultivated in either sulfur or ferrous iron. Based on these findings, an energy-substrate-dependent regulation mode of AfeI/R in A. ferrooxidans was illuminated that AfeI/R could produce different types of acyl-HSLs and employ specific acyl-HSLs to regulate specific genes in response to different energy substrates. The discovery of the AfeI/R-mediated substrate-dependent regulatory mode expands our knowledge on the function of QS system in the chemoautotrophic sulfur- and ferrous iron-oxidizing bacteria, and provides new insights in understanding energy metabolism modulation, population control, bacteria-driven bioleaching process, and the coevolution between the acidophiles and their acidic habitats.

Indexed as

AcidithiobacillusAcyl-ButyrolactonesBacterial ProteinsEnergy MetabolismExtracellular Polymeric Substance MatrixGene Expression Regulation, BacterialIronQuorum SensingSulfurTranscription FactorsAcyl-ButyrolactonesBacterial ProteinsIronLuxI protein, BacteriaSulfurTranscription Factors

Identifiers

PMID32656931
PMCPMC7984328
OpenAlexW3041459556

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.