Evidence map›Paper›PMID 32655288›Full record

ArticleCurrent genomics2019

Molecular and Genomic Characterization of PFAB2: A Non-virulent

Aparna Banerjee, Vikas K Somani, Priyanka Chakraborty, Rakesh Bhatnagar, Rajeev K Varshney, Alex Echeverría-Vega, Sara Cuadros-Orellana, Rajib Bandopadhyay

Open access · bronzeAbstract read
In one paragraph

Article in Current genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Diagnostic challenges within theNew microbes and new infections
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Aparna Banerjee1UGC-Center of Advanced Study, Department of Botany, The University of Burdwan, Golapbag, Burdwan, West Bengal, India; 2Molecular Biology and Genetic Engineering Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi110067, India; 3Centre of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India; 4Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Posgrado, Universidad Católica del Maule, Talca, Chile; 5Facultad de Ciencias Agrarias y Forestales, Centro de Biotecnología de los Recursos Naturales, Universidad Católica del Maule, Talca, Chile.
Vikas K Somani1UGC-Center of Advanced Study, Department of Botany, The University of Burdwan, Golapbag, Burdwan, West Bengal, India; 2Molecular Biology and Genetic Engineering Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi110067, India; 3Centre of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India; 4Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Posgrado, Universidad Católica del Maule, Talca, Chile; 5Facultad de Ciencias Agrarias y Forestales, Centro de Biotecnología de los Recursos Naturales, Universidad Católica del Maule, Talca, Chile.
Priyanka Chakraborty1UGC-Center of Advanced Study, Department of Botany, The University of Burdwan, Golapbag, Burdwan, West Bengal, India; 2Molecular Biology and Genetic Engineering Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi110067, India; 3Centre of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India; 4Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Posgrado, Universidad Católica del Maule, Talca, Chile; 5Facultad de Ciencias Agrarias y Forestales, Centro de Biotecnología de los Recursos Naturales, Universidad Católica del Maule, Talca, Chile.
Rakesh Bhatnagar1UGC-Center of Advanced Study, Department of Botany, The University of Burdwan, Golapbag, Burdwan, West Bengal, India; 2Molecular Biology and Genetic Engineering Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi110067, India; 3Centre of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India; 4Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Posgrado, Universidad Católica del Maule, Talca, Chile; 5Facultad de Ciencias Agrarias y Forestales, Centro de Biotecnología de los Recursos Naturales, Universidad Católica del Maule, Talca, Chile.
Rajeev K Varshney1UGC-Center of Advanced Study, Department of Botany, The University of Burdwan, Golapbag, Burdwan, West Bengal, India; 2Molecular Biology and Genetic Engineering Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi110067, India; 3Centre of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India; 4Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Posgrado, Universidad Católica del Maule, Talca, Chile; 5Facultad de Ciencias Agrarias y Forestales, Centro de Biotecnología de los Recursos Naturales, Universidad Católica del Maule, Talca, Chile.
Alex Echeverría-Vega1UGC-Center of Advanced Study, Department of Botany, The University of Burdwan, Golapbag, Burdwan, West Bengal, India; 2Molecular Biology and Genetic Engineering Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi110067, India; 3Centre of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India; 4Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Posgrado, Universidad Católica del Maule, Talca, Chile; 5Facultad de Ciencias Agrarias y Forestales, Centro de Biotecnología de los Recursos Naturales, Universidad Católica del Maule, Talca, Chile.
Sara Cuadros-Orellana1UGC-Center of Advanced Study, Department of Botany, The University of Burdwan, Golapbag, Burdwan, West Bengal, India; 2Molecular Biology and Genetic Engineering Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi110067, India; 3Centre of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India; 4Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Posgrado, Universidad Católica del Maule, Talca, Chile; 5Facultad de Ciencias Agrarias y Forestales, Centro de Biotecnología de los Recursos Naturales, Universidad Católica del Maule, Talca, Chile.
Rajib Bandopadhyay1UGC-Center of Advanced Study, Department of Botany, The University of Burdwan, Golapbag, Burdwan, West Bengal, India; 2Molecular Biology and Genetic Engineering Laboratory, School of Biotechnology, Jawaharlal Nehru University, New Delhi110067, India; 3Centre of Excellence in Genomics, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India; 4Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Vicerrectoría de Investigación y Posgrado, Universidad Católica del Maule, Talca, Chile; 5Facultad de Ciencias Agrarias y Forestales, Centro de Biotecnología de los Recursos Naturales, Universidad Católica del Maule, Talca, Chile.
University of Burdwan · INCatholic University of the Maule · CLJawaharlal Nehru University · INInternational Crops Research Institute for the Semi-Arid Tropics · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThermophilic bacilli in both aerobic or facultative anaerobic forms have been isolated for over a hundred years from different mesophilic or thermophilic environments as they are potential source of bioactive secondary metabolites. But the taxonomic resolution in the

objectiveThe present study aimed at the molecular and genomic characterization of a recently reported thermophilic and environmental isolate of

methodsWe performed comparative genomics between the PFAB2 genome and different strains of

resultsThe pangenomic analysis suggests that the PFAB2 genome harbors no complete prophage genes. Cluster analysis of Bray-Kurtis similarity resemblance matrix revealed that gene content of PFAB2 is more closely related to other environmental strains of

conclusionThe high replication rate in a wide range of temperatures and culture media, the non-pathogenicity, the good spore forming capability and its genomic similarity to the Ames strain together make PFAB2 an interesting model strain for the study of the pathogenic evolution of

Indexed as

avirulenceBacillus anthraciscomparative genomicspangenomicspathogenesissecretome analysis

Identifiers

PMID32655288
PMCPMC7327970
OpenAlexW2992552142

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.