Evidence map›Paper›PMID 32653903›Full record

ArticleGenome biology and evolution2020

The Genome of the Softshell Clam Mya arenaria and the Evolution of Apoptosis.

David C Plachetzki, M Sabrina Pankey, Matthew D MacManes, Michael P Lesser, Charles W Walker

Abstract read
In one paragraph

Article in Genome biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Invasive mussels fashion silk-like byssus via mechanical processing of massive horizontally acquired coiled coils.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

David C PlachetzkiMolecular, Cellular and Biomedical Sciences, University of New Hampshire.
M Sabrina PankeyMolecular, Cellular and Biomedical Sciences, University of New Hampshire.
Matthew D MacManesMolecular, Cellular and Biomedical Sciences, University of New Hampshire.
Michael P LesserMolecular, Cellular and Biomedical Sciences, University of New Hampshire.
Charles W WalkerMolecular, Cellular and Biomedical Sciences, University of New Hampshire.

Funding

Uncovering physiological and genomic mechanisms that enable dehydration tolerance in rodentsR35GM128843 · NIGMS · UNIVERSITY OF NEW HAMPSHIRE · PI MACMANES, MATTHEW DAVID · 2018 to 2025
$2.5M
Cytoplasmic Reactivation of p53 Family MembersR15CA104112 · NCI · UNIVERSITY OF NEW HAMPSHIRE · PI WALKER, CHARLES WAYNE · 2004 to 2004
$219k
NCI NIH HHS R15 CA104112NIGMS NIH HHS R35 GM128843
6 · The paper itself

Abstract

Apoptosis is a fundamental feature of multicellular animals and is best understood in mammals, flies, and nematodes, with the invertebrate models being thought to represent a condition of ancestral simplicity. However, the existence of a leukemia-like cancer in the softshell clam Mya arenaria provides an opportunity to re-evaluate the evolution of the genetic machinery of apoptosis. Here, we report the whole-genome sequence for M. arenaria which we leverage with existing data to test evolutionary hypotheses on the origins of apoptosis in animals. We show that the ancestral bilaterian p53 locus, a master regulator of apoptosis, possessed a complex domain structure, in contrast to that of extant ecdysozoan p53s. Further, ecdysozoan taxa, but not chordates or lophotrochozoans like M. arenaria, show a widespread reduction in apoptosis gene copy number. Finally, phylogenetic exploration of apoptosis gene copy number reveals a striking linkage with p53 domain complexity across species. Our results challenge the current understanding of the evolution of apoptosis and highlight the ancestral complexity of the bilaterian apoptotic tool kit and its subsequent dismantlement during the ecdysozoan radiation.

Indexed as

Genes, p53GenomePhylogenyAnimalsApoptosisMyaapoptosisEcdysozoagene family evolutionMyasoftshell clam

Identifiers

PMID32653903
PMCPMC7531772

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.