Evidence map›Paper›PMID 32652677›Full record

ArticleHuman mutation2020

Expansion of the phenotypic spectrum of de novo missense variants in kinesin family member 1A (KIF1A).

Simranpreet Kaur, Nicole J Van Bergen, Kristen J Verhey, Cameron J Nowell, Breane Budaitis, Yang Yue, Carolyn Ellaway, Nicola Brunetti-Pierri, Gerarda Cappuccio, Irene Bruno and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in Human mutation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
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  14. Autosomal dominant neurodevelopmental disorders associated withZhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2023
    Article
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  20. Kinesins in Mammalian Spermatogenesis and Germ Cell Transport.Frontiers in cell and developmental biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 11 institutions in 4 countries.

Simranpreet KaurBrain and Mitochondrial Research Group, Murdoch Children's Research Institute, Royal Children's Hospital, Melbourne, Victoria, Australia.ORCID 0000-0002-0689-2965
Nicole J Van BergenBrain and Mitochondrial Research Group, Murdoch Children's Research Institute, Royal Children's Hospital, Melbourne, Victoria, Australia.ORCID 0000-0002-6768-3665
Kristen J VerheyDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0001-9329-4981
Cameron J NowellDrug Discover Biology, Monash Institute of Pharmaceutical Sciences, Monash University, Melbourne, Victoria, Australia.ORCID 0000-0002-8662-9840
Breane BudaitisCellular and Molecular Biology Program, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0003-1212-3705
Yang YueDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0002-8302-9778
Carolyn EllawayDiscipline of Genomic Medicine, School of Medical Sciences, Faculty of Medicine and Health, University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0002-5752-5698
Nicola Brunetti-PierriDepartment of Translational Medicine, University of Naples "Federico II", Naples, Italy.ORCID 0000-0002-6895-8819
Gerarda CappuccioDepartment of Translational Medicine, University of Naples "Federico II", Naples, Italy.ORCID 0000-0003-3934-2342
Irene BrunoDepartment of Precision Medicine, University of Campania "Luigi Vanvitelli", Naples, Italy.ORCID 0000-0002-2437-6198
Lia BoyleDivision of Molecular Genetics, Columbia University Irving Medical Center, New York, New York.ORCID 0000-0002-8082-7125
Vincenzo NigroDepartment of Precision Medicine, University of Campania "Luigi Vanvitelli", Naples, Italy.
Annalaura TorellaDepartment of Precision Medicine, University of Campania "Luigi Vanvitelli", Naples, Italy.ORCID 0000-0003-2479-6018
Tony RoscioliNew South Wales Health Pathology, Randwick, New South Wales, Australia.ORCID 0000-0003-1502-5000
Mark J CowleyKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.ORCID 0000-0002-9519-5714
Sean MasseyBrain and Mitochondrial Research Group, Murdoch Children's Research Institute, Royal Children's Hospital, Melbourne, Victoria, Australia.ORCID 0000-0002-0759-9306
Rhea SonawaneFaculty of Science, Engineering and Built Environment, Deakin University, Melbourne, Australia.ORCID 0000-0003-2541-3496
Matthew D BurtonFlow Cytometry and Imaging Facility, Murdoch Children's Research Institute, Royal Children's Hospital, Melbourne, Victoria, Australia.
Bitten Schonewolf-GreulichDepartment of Clinical Genetics, Kennedy Center, Copenhagen University Hospital, Rigshospitalet, Glostrup, Denmark.ORCID 0000-0003-0088-0792
Zeynep TümerDepartment of Clinical Genetics, Kennedy Center, Copenhagen University Hospital, Rigshospitalet, Glostrup, Denmark.ORCID 0000-0002-4777-5802
Wendy K ChungDepartments of Paediatrics and Medicine, Columbia University Medical Center, New York, New York.ORCID 0000-0003-3438-5685
Wendy A GoldMolecular Neurobiology Research Laboratory, Kids Research, Children's Hospital at Westmead, and The Children's Medical Research Institute, Westmead, New South Wales, Australia.ORCID 0000-0003-1808-0646
John ChristodoulouBrain and Mitochondrial Research Group, Murdoch Children's Research Institute, Royal Children's Hospital, Melbourne, Victoria, Australia.ORCID 0000-0002-8431-0641
Royal Children's Hospital · AUThe University of Sydney · AUUniversity of Campania "Luigi Vanvitelli" · ITUniversity of Michigan · USColumbia University Irving Medical Center · USGlostrup Hospital · DKTelethon Institute Of Genetics And Medicine · ITDeakin University · AUGarvan Institute of Medical Research · AUMonash University · AUNew South Wales Department of Health · AU

Funding

NRSA Training CoreTL1TR001875 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SPANN, MARISA N, TAYLOR, JACQUELYN Y · 2016 to 2025
$8.9M
Kinesin Motors and Microtubule-based TraffickingR35GM131744 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Kristen J. Verhey · 2019 to 2026
$6.3M
Regulation of the molecular motor kinesin-IR01GM070862 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VERHEY, KRISTEN J. · 2005 to 2018
$4.2M
Role of the Kinesin KIF1A in Neurological DiseaseR01NS114636 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CHUNG, WENDY K, GENNERICH, ARNE · 2020 to 2024
$3.2M
NCATS NIH HHS TL1 TR001875NIGMS NIH HHS R01 GM070862NIGMS NIH HHS R35 GM131744NINDS NIH HHS R01 NS114636
6 · The paper itself

Abstract

Defects in the motor domain of kinesin family member 1A (KIF1A), a neuron-specific ATP-dependent anterograde axonal transporter of synaptic cargo, are well-recognized to cause a spectrum of neurological conditions, commonly known as KIF1A-associated neurological disorders (KAND). Here, we report one mutation-negative female with classic Rett syndrome (RTT) harboring a de novo heterozygous novel variant [NP_001230937.1:p.(Asp248Glu)] in the highly conserved motor domain of KIF1A. In addition, three individuals with severe neurodevelopmental disorder along with clinical features overlapping with KAND are also reported carrying de novo heterozygous novel [NP_001230937.1:p.(Cys92Arg) and p.(Pro305Leu)] or previously reported [NP_001230937.1:p.(Thr99Met)] variants in KIF1A. In silico tools predicted these variants to be likely pathogenic, and 3D molecular modeling predicted defective ATP hydrolysis and/or microtubule binding. Using the neurite tip accumulation assay, we demonstrated that all novel KIF1A variants significantly reduced the ability of the motor domain of KIF1A to accumulate along the neurite lengths of differentiated SH-SY5Y cells. In vitro microtubule gliding assays showed significantly reduced velocities for the variant p.(Asp248Glu) and reduced microtubule binding for the p.(Cys92Arg) and p.(Pro305Leu) variants, suggesting a decreased ability of KIF1A to move along microtubules. Thus, this study further expanded the phenotypic characteristics of KAND individuals with pathogenic variants in the KIF1A motor domain to include clinical features commonly seen in RTT individuals.

Indexed as

KinesinsMutation, MissenseFamilyFemaleHeterozygoteHumansMutationNeurodevelopmental DisordersRett SyndromeKIF1A protein, humanKinesinsKANDKIF1AkinesinMECP2microtubuleneurite tip accumulationRett syndrome

Identifiers

PMID32652677
PMCPMC7908811
OpenAlexW3041161318

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.