Evidence map›Paper›PMID 32652060›Full record

ArticleBiophysical journal2020

Dynamics of the HIV Gag Lattice Detected by Localization Correlation Analysis and Time-Lapse iPALM.

Ipsita Saha, Saveez Saffarian

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Membrane bending energy selects for compact growth of protein assemblies.bioRxiv : the preprint server for biology · 2025
    Article
  5. Electron Tomography as a Tool to Study SARS-CoV-2 Morphology.International journal of molecular sciences · 2024
    Review
  6. Review
  7. Article
  8. Article
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  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Ipsita SahaCenter for Cell and Genome Science, University of Utah, Salt Lake City, Utah; Department of Physics and Astronomy, University of Utah, Salt Lake City, Utah.
Saveez SaffarianCenter for Cell and Genome Science, University of Utah, Salt Lake City, Utah; Department of Physics and Astronomy, University of Utah, Salt Lake City, Utah; Department of Biology, University of Utah, Salt Lake City, Utah. Electronic address: saffarian@physics.utah.edu.
University of Utah · US

Funding

Dynamics of Gag-Pol auto-processing and ESCRT recruitment during HIV buddingR01AI150474 · NIAID · UNIVERSITY OF UTAH · PI SAFFARIAN, SAVEEZ · 2019 to 2021
$974k
Dynamics of Gag-Pol auto-processing and ESCRT recruitment during HIV buddingR01GM125444 · NIGMS · UNIVERSITY OF UTAH · PI SAFFARIAN, SAVEEZ · 2017 to 2018
$633k
NIAID NIH HHS R01 AI150474NIGMS NIH HHS R01 GM125444
6 · The paper itself

Abstract

Immature human immunodeficiency virus (HIV) virions have a lattice of Gag and Gag-Pol proteins anchored to the lumen of their envelope. Using electron microscopy, we demonstrate that HIV virus-like particles (VLPs) assembled by the viral protein Gag and tagged at its C-terminus with the fluorescent protein Dendra2 have the same morphology and size as the VLPs assembled using only HIV Gag. We characterize the photophysical properties of Dendra2 and demonstrate that 60% of Dendra2 molecules can be photoswitched and reliably counted in our interferometric photoactivated localization microscopy (iPALM) setup. We further perform iPALM imaging on immobilized HIV Gag-Dendra2 VLPs and demonstrate that we can localize and count 900-1600 Dendra2 molecules within each immobilized VLP with a single-molecule localization precision better than (10 nm)

Indexed as

Gene Products, gagHIV Infectionsgag Gene Products, Human Immunodeficiency VirusHumansInterferometryTime-Lapse ImagingViriongag Gene Products, Human Immunodeficiency VirusGene Products, gag

Identifiers

PMID32652060
PMCPMC7399489
OpenAlexW3037530152

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.