Evidence map›Paper›PMID 32652058›Full record

ArticleBiophysical journal2020

The Dual PDZ Domain from Postsynaptic Density Protein 95 Forms a Scaffold with Peptide Ligand.

Nazahiyah A Rodzli, Michael P Lockhart-Cairns, Colin W Levy, John Chipperfield, Louise Bird, Clair Baldock, Stephen M Prince

Abstract read
In one paragraph

Article in Biophysical journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nazahiyah A RodzliSchool of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom.
Michael P Lockhart-CairnsWellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, Manchester Academic Health Science Centre, Manchester, United Kingdom.
Colin W LevyManchester Protein Structure Facility, Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom.
John ChipperfieldSchool of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom.
Louise BirdOxford Protein Production Facility, Wellcome Trust Centre for Human Genetics, Headington, Oxford, United Kingdom.
Clair BaldockWellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, Manchester Academic Health Science Centre, Manchester, United Kingdom.
Stephen M PrinceSchool of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester, United Kingdom. Electronic address: steve.prince@manchester.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/N015398/1Biotechnology and Biological Sciences Research Council BB/R008221/1Wellcome TrustWellcome Trust 203128/Z/16/Z
6 · The paper itself

Abstract

PSD-95 is a member of the membrane-associated guanylate kinase class of proteins that forms scaffolding interactions with partner proteins, including ion and receptor channels. PSD-95 is directly implicated in modulating the electrical responses of excitable cells. The first two PSD-95/disks large/zona occludens (PDZ) domains of PSD-95 have been shown to be the key component in the formation of channel clusters. We report crystal structures of this dual domain in both apo- and ligand-bound form: thermodynamic analysis of the ligand association and small-angle x-ray scattering of the dual domain in the absence and presence of ligands. These experiments reveal that the ligated double domain forms a three-dimensional scaffold that can be described by a space group. The concentration of the components in this study is comparable with those found in compartments of excitable cells such as the postsynaptic density and juxtaparanodes of Ranvier. These in vitro experiments inform the basis of the scaffolding function of PSD-95 and provide a detailed model for scaffold formation by the PDZ domains of PSD-95.

Indexed as

Nerve Tissue ProteinsPDZ DomainsDisks Large Homolog 4 ProteinGuanylate KinasesLigandsPeptidesProtein BindingDisks Large Homolog 4 ProteinGuanylate KinasesLigandsNerve Tissue ProteinsPeptides

Identifiers

PMID32652058
PMCPMC7399497

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.