Evidence map›Paper›PMID 32651916›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2020

Optogenetic Control of Gene Expression Using Cryptochrome 2 and a Light-Activated Degron.

Carmen N Hernández-Candia, Chandra L Tucker

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. A light way for nuclear cell biologists.Journal of biochemistry · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Carmen N Hernández-CandiaDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA.
Chandra L TuckerDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA. chandra.tucker@cuanschutz.edu.

Funding

Control of Protein Activity Via Light Stimulated DimerizersR01GM100225 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI TUCKER, CHANDRA L · 2012 to 2019
$3.3M
Optogenetic control of protein assemblyR21GM126253 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI TUCKER, CHANDRA L · 2017 to 2018
$428k
NIGMS NIH HHS R01 GM100225NIGMS NIH HHS R21 GM126253
6 · The paper itself

Abstract

Optogenetic tools allow for use of light as an external input to control cellular processes. When applied to regulate the function of transcription factors, optogenetic approaches provide a tunable, reversible, and bidirectional method to control gene expression. Herein, we present a detailed method to induce gene expression in mammalian cells using the light dependent dimerization of cryptochrome 2 (CRY2) and CIB1 to complement a split transcription factor. We also describe a protocol to disrupt gene expression with light by fusing a dimeric transcription factor to CRY2. When combined with a light-induced degron attached to the gene product, this method allows for rapid modulation of target protein abundance.

Indexed as

LightCalcium-Binding ProteinsCryptochromesHEK293 CellsHumansOptogeneticsTranscription FactorsCalcium-Binding ProteinsCIB1 protein, humanCRY2 protein, humanCryptochromesTranscription FactorsCRY2DegronLightOptogeneticsTranscription

Identifiers

PMID32651916
PMCPMC7891899

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.