Evidence map›Paper›PMID 32651448›Full record

ArticleCommunications biology2020

Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms.

Yongxin Li, Akihito Omori, Rachel L Flores, Sheri Satterfield, Christine Nguyen, Tatsuya Ota, Toko Tsurugaya, Tetsuro Ikuta, Kazuho Ikeo, Mani Kikuchi and 25 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 61 citations in OpenAlex.

  1. The tuxedo sea urchinbioRxiv : the preprint server for biology · 2026
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  2. Review
  3. Sea CucumberResearch square · 2026
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  4. Review
  5. Article
  6. Review
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  18. Analysis of theCell genomics · 2023
    Article
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

35 authors at 18 institutions in 3 countries.

Yongxin LiState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Akihito OmoriSado Island Center for Ecological Sustainability, Niigata University, Niigata, Japan.ORCID http://orcid.org/0000-0003-0571-6553
Rachel L FloresDept. of Biological Sciences, California State Univesity, Long Beach, CA, USA.
Sheri SatterfieldDept. of Biological Sciences, California State Univesity, Long Beach, CA, USA.
Christine NguyenDept. of Biological Sciences, California State Univesity, Long Beach, CA, USA.
Tatsuya OtaSOKENDAI, Kanagawa, Japan.ORCID http://orcid.org/0000-0002-1115-5169
Toko TsurugayaUrawa University, Saitama, Japan.
Tetsuro IkutaJapan Agency for Marine-Earth Science and Technology (JAMSTEC), Kanagawa, Japan.
Kazuho IkeoSOKENDAI, Kanagawa, Japan.
Mani KikuchiHokkaido University, Sapporo, Hokkaido, Japan.
Jason C K LeongDept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Adrian ReichProvidence Institute of Molecular Oogenesis, Brown University, Providence, RI, USA.ORCID http://orcid.org/0000-0002-1680-8659
Meng HaoState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Wenting WanState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Yang DongYunnan Agricultural University, Kunming, China.ORCID http://orcid.org/0000-0001-6212-3055
Yaondong RenState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Si ZhangShanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.
Tao ZengShanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.ORCID http://orcid.org/0000-0002-0295-3994
Masahiro UesakaRIKEN Center for Biosystems Dynamics Research (BDR), Kobe, Hyogo, Japan.
Yui UchidaDept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Xueyan LiState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.ORCID http://orcid.org/0000-0003-0457-7846
Tomoko F ShibataDept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Takahiro BinoNIBB Core Research Facilities, National Institute of Basic Biology, Okazaki, Aichi, Japan.
Kota OgawaFaculty of Social and Cultural Studies, Kyushu University, Fukuoka, Japan.
Shuji ShigenobuNIBB Core Research Facilities, National Institute of Basic Biology, Okazaki, Aichi, Japan.ORCID http://orcid.org/0000-0003-4640-2323
Mariko KondoDept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.ORCID http://orcid.org/0000-0002-8072-2729
Fayou WangShanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.
Luonan ChenShanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.ORCID http://orcid.org/0000-0002-3960-0068
Gary WesselProvidence Institute of Molecular Oogenesis, Brown University, Providence, RI, USA.
Hidetoshi SaigaTokyo Metropolitan University, Yokosuka, Tokyo, Japan.
R Andrew CameronBeckman Institute, Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID http://orcid.org/0000-0003-3947-6041
Brian LivingstonDept. of Biological Sciences, California State Univesity, Long Beach, CA, USA.
Cynthia BradhamDepartment of Biology, Boston Univerisity, Boston, MA, USA.
Wen WangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China. wwang@mail.kiz.ac.cn.ORCID http://orcid.org/0000-0002-7801-2066
Naoki IrieDept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan. irie@bs.s.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-6720-381X
Kunming Institute of Zoology · CNThe University of Tokyo · JPCalifornia State University, Long Beach · USChinese Academy of Sciences · CNBrown University · USNational Institute for Basic Biology · JPThe Graduate University for Advanced Studies, SOKENDAI · JPBoston University · USCalifornia Institute of Technology · USHokkaido University · JPJapan Agency for Marine-Earth Science and Technology · JPKyushu University · JPNiigata University · JPNorthwestern Polytechnical University · CNRIKEN Center for Biosystems Dynamics Research · JPTokyo Metropolitan University · JPUrawa University · JPYunnan Agricultural University · CN

Funding

Mechanisms of quiescence in primordial germ cellsR01GM125071 · NIGMS · BROWN UNIVERSITY · PI WESSEL, GARY M · 2017 to 2020
$1.4M
NIGMS NIH HHS R01 GM125071
6 · The paper itself

Abstract

Echinoderms are an exceptional group of bilaterians that develop pentameral adult symmetry from a bilaterally symmetric larva. However, the genetic basis in evolution and development of this unique transformation remains to be clarified. Here we report newly sequenced genomes, developmental transcriptomes, and proteomes of diverse echinoderms including the green sea urchin (L. variegatus), a sea cucumber (A. japonicus), and with particular emphasis on a sister group of the earliest-diverged echinoderms, the feather star (A. japonica). We learned that the last common ancestor of echinoderms retained a well-organized Hox cluster reminiscent of the hemichordate, and had gene sets involved in endoskeleton development. Further, unlike in other animal groups, the most conserved developmental stages were not at the body plan establishing phase, and genes normally involved in bilaterality appear to function in pentameric axis development. These results enhance our understanding of the divergence of protostomes and deuterostomes almost 500 Mya.

Indexed as

AnimalsAnimal ShellsBiological EvolutionDNAEchinodermataGene LibraryGenes, HomeoboxGenomeLytechinusPhylogenyProteomicsSequence Analysis, DNAStichopusDNA

Identifiers

PMID32651448
PMCPMC7351957
OpenAlexW3041924726

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.