Evidence map›Paper›PMID 32651394›Full record

ArticleScientific reports2020

Helicobacter pylori patient isolates from South Africa and Nigeria differ in virulence factor pathogenicity profile and associated gastric disease outcome.

Pia Palamides, Tolulope Jolaiya, Ayodeji Idowu, Eva Loell, Charles Onyekwere, Rose Ugiagbe, Ifeanyi Agbo, Olufunmilayo Lesi, Dennis Ndububa, Olusegun Adekanle and 9 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Prevalence of primaryGut microbes · 2026
    Review
  3. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  4. Biomolecules · 2026
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Antibiotics (Basel, Switzerland) · 2023
    Review
  11. Pathogens (Basel, Switzerland) · 2022
    Article
  12. Helicobacter pylori: an up-to-date overview on the virulence and pathogenesis mechanisms.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 11 institutions in 3 countries.

Pia PalamidesChair of Medical Microbiology and Hospital Epidemiology, Max von Pettenkofer-Institute, Faculty of Medicine, LMU Munich, Munich, Germany. Pia_palamides@web.de.
Tolulope JolaiyaDepartment of Microbiology, University of Lagos, Akoka, Yaba Lagos, Nigeria.
Ayodeji IdowuDepartment of Biochemistry and Microbiology, Faculty of Science and Agriculture, University of Fort Hare, Alice, 5700, Eastern Cape, South Africa.
Eva LoellChair of Medical Microbiology and Hospital Epidemiology, Max von Pettenkofer-Institute, Faculty of Medicine, LMU Munich, Munich, Germany.
Charles OnyekwereDepartment of Medicine, Lagos State University Teaching Hospital, Ikeja, Nigeria.
Rose UgiagbeDepartment of Medicine, University of Benin Teaching Hospital, Benin, Nigeria.
Ifeanyi AgboDepartment of Medicine, University of Benin Teaching Hospital, Benin, Nigeria.
Olufunmilayo LesiDepartment of Medicine, Lagos University Teaching Hospital, Idi-Araba, Nigeria.
Dennis NdububaDepartment of Medicine, Obafemi Awolowo University Teaching Hospital Complex, Ile-Ife, Nigeria.
Olusegun AdekanleDepartment of Medicine, Obafemi Awolowo University Teaching Hospital Complex, Ile-Ife, Nigeria.
Manuel CarranzaInstitute for Pathology, Faculty of Medicine, LMU Munich, Munich, Germany.
Reidwaan AllyDivision of Gastroenterology, Chris Hani Baragwanath Academic Hospital (CHBAH), Soweto, Johannesburg, 2013, South Africa.
Henry NjomDepartment of Biochemistry and Microbiology, Faculty of Science and Agriculture, University of Fort Hare, Alice, 5700, Eastern Cape, South Africa.
Isaac A AdeleyeDepartment of Microbiology, University of Lagos, Akoka, Yaba Lagos, Nigeria.
Ute HarrisonChair of Medical Microbiology and Hospital Epidemiology, Max von Pettenkofer-Institute, Faculty of Medicine, LMU Munich, Munich, Germany.
Anna ClarkeDepartment of Biochemistry and Microbiology, Faculty of Science and Agriculture, University of Fort Hare, Alice, 5700, Eastern Cape, South Africa.
Wolfgang FischerChair of Medical Microbiology and Hospital Epidemiology, Max von Pettenkofer-Institute, Faculty of Medicine, LMU Munich, Munich, Germany.
Stella SmithMolecular Biology and Biotechnology Department, Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria.
Rainer HaasChair of Medical Microbiology and Hospital Epidemiology, Max von Pettenkofer-Institute, Faculty of Medicine, LMU Munich, Munich, Germany. haas@mvp.lmu.de.
Ludwig-Maximilians-Universität München · DEUniversity of Fort Hare · ZAGerman Center for Infection Research · DEObafemi Awolowo University Teaching Hospitals Complex · NGUniversity of Benin Teaching Hospital · NGUniversity of Lagos · NGChris Hani Baragwanath Hospital · ZALagos State University Teaching Hospital · NGLagos University Teaching Hospital · NGLMU Klinikum · DENigerian Institute of Medical Research · NG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Helicobacter pylori is a gram-negative, spiral-shaped bacterial pathogen and the causative agent for gastritis, peptic ulcer disease and classified as a WHO class I carcinogen. While the prevalence of H. pylori infections in Africa is among the highest in the world, the incidence of gastric cancer is comparably low. Little is known about other symptoms related to the H. pylori infection in Africa and the association with certain phenotypes of bacterial virulence. We established a network of study sites in Nigeria (NG) and South Africa (ZA) to gain an overview on the epidemiological situation. In total 220 isolates from 114 patients were analyzed and 118 different patient isolates examined for the presence of the virulence factors cagA, vacA, dupA, their phylogenetic origin and their resistance against the commonly used antibiotics amoxicillin, clarithromycin, metronidazole and tetracycline. We report that H. pylori isolates from Nigeria and South Africa differ significantly in their phylogenetic profiles and in their expression of virulence factors. VacA mosaicism is intensive, resulting in m1-m2 vacA chimeras and frequent s1m1 and s1m2 vacA subtypes in hpAfrica2 strains. Gastric lesions were diagnosed more frequent in Nigerian versus South African patients and H. pylori isolates that are resistant against one or multiple antibiotics occur frequently in both countries.

Indexed as

Helicobacter pyloriBreath TestsCephalosporinsEndoscopyEvolution, MolecularFemaleGeographyHumansMaleMicrobial Sensitivity TestsNigeriaPhenotypePhylogenyPolymerase Chain ReactionPrevalenceSouth AfricaCephalosporinsnitrocefinUreaVirulence Factors

Identifiers

PMID32651394
PMCPMC7351988
OpenAlexW3042012603

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.