Evidence map›Paper›PMID 32651223›Full record

ArticleJournal of the American Society of Nephrology : JASN2020

Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury.

Jun-Jae Chung, Leonard Goldstein, Ying-Jiun J Chen, Jiyeon Lee, Joshua D Webster, Merone Roose-Girma, Sharad C Paudyal, Zora Modrusan, Anwesha Dey, Andrey S Shaw

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 184 citations in OpenAlex.

  1. Trial
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  3. The CTNNB1-TRIM28 complex governs hormone-induced RNA polymerase II dynamics in kidney epithelial cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  9. Podocyte-specific deletion of mechanochannel Piezo1 exacerbates proteinuria and podocyte injury in mouse hypertensive nephropathy.Hypertension research : official journal of the Japanese Society of Hypertension · 2026
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  15. bioRxiv : the preprint server for biology · 2025
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  20. Targeting the Hippo pathway in cancer.Nature reviews. Drug discovery · 2025
    Review

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jun-Jae ChungDepartment of Research Biology, Genentech, South San Francisco, California.ORCID 0000-0002-3053-5693
Leonard GoldsteinDepartment of Molecular Biology, Genentech, South San Francisco, California.ORCID 0000-0003-4645-553X
Ying-Jiun J ChenDepartment of Molecular Biology, Genentech, South San Francisco, California.
Jiyeon LeeDepartment of Research Biology, Genentech, South San Francisco, California.ORCID 0000-0002-8952-7938
Joshua D WebsterDepartment of Pathology, Genentech, South San Francisco, California.
Merone Roose-GirmaDepartment of Molecular Biology, Genentech, South San Francisco, California.
Sharad C PaudyalDepartment of Pathology and Immunology, Washington University, St. Louis, Missouri.
Zora ModrusanDepartment of Molecular Biology, Genentech, South San Francisco, California.
Anwesha DeyDepartment of Molecular Oncology, Genentech, South San Francisco, California.
Andrey S ShawDepartment of Research Biology, Genentech, South San Francisco, California shawa6@gene.com.
Molecular Oncology (United States) · USWashington University in St. Louis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe glomerulus is a specialized capillary bed that is involved in urine production and BP control. Glomerular injury is a major cause of CKD, which is epidemic and without therapeutic options. Single-cell transcriptomics has radically improved our ability to characterize complex organs, such as the kidney. Cells of the glomerulus, however, have been largely underrepresented in previous single-cell kidney studies due to their paucity and intractability.

methodsSingle-cell RNA sequencing comprehensively characterized the types of cells in the glomerulus from healthy mice and from four different disease models (nephrotoxic serum nephritis, diabetes, doxorubicin toxicity, and CD2AP deficiency).

resultsAll cell types in the glomerulus were identified using unsupervised clustering analysis. Novel marker genes and gene signatures of mesangial cells, vascular smooth muscle cells of the afferent and efferent arterioles, parietal epithelial cells, and three types of endothelial cells were identified. Analysis of the disease models revealed cell type-specific and injury type-specific responses in the glomerulus, including acute activation of the Hippo pathway in podocytes after nephrotoxic immune injury. Conditional deletion of YAP or TAZ resulted in more severe and prolonged proteinuria in response to injury, as well as worse glomerulosclerosis.

conclusionsGeneration of comprehensive high-resolution, single-cell transcriptomic profiles of the glomerulus from healthy and injured mice provides resources to identify novel disease-related genes and pathways.

Indexed as

AnimalsDisease Models, AnimalGene Expression ProfilingKidney DiseasesKidney GlomerulusMesangial CellsMiceMice, Inbred C57BLPodocytesanti-GBM diseasechronic kidney diseasediabetic glomerulopathyglomerular diseasetranscriptional profiling

Identifiers

PMID32651223
PMCPMC7609001
OpenAlexW3041541923

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.