Evidence map›Paper›PMID 32650629›Full record

ArticlePlants (Basel, Switzerland)2020

In vivo Reporters for Visualizing Alternative Splicing of Hormonal Genes.

Ivan Kashkan, Ksenia Timofeyenko, Eva Kollárová, Kamil Růžička

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ivan KashkanLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, 165 02 Prague, Czech Republic.ORCID 0000-0002-1971-8747
Ksenia TimofeyenkoLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, 165 02 Prague, Czech Republic.
Eva KollárováFunctional Genomics and Proteomics of Plants, Central European Institute of Technology and National Centre for Biomolecular Research, Masaryk University, 625 00 Brno, Czech Republic.ORCID 0000-0003-2709-9461
Kamil RůžičkaLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany, Czech Academy of Sciences, 165 02 Prague, Czech Republic.ORCID 0000-0002-0602-2046
Central European Institute of Technology · CZ

Funding

European Regional Development Fund CZ.02.1.01/0.0/0.0/16_013/0001775Grantová Agentura České Republiky 16-26428SMinistry of Education, Youth and Science CZ.02.1.01/0.0/0.0/16_019/0000738Ministry of Education, Youth and Science LM2018129 - Czech BioImagingMinistry of Education, Youth and Science LTC18073Ministry of Education, Youth and Science OPPK CZ.2.16/3.1.00/21519
6 · The paper itself

Abstract

Rapid progress in plant molecular biology in recent years has uncovered the main players in hormonal pathways and characterized transcriptomic networks associated with hormonal response. However, the role of RNA processing, in particular alternative splicing (AS), remains largely unexplored. Here, using example genes involved in cytokinin signaling, brassinosteroid synthesis and auxin transport, we present a set of reporters devised to visualize their AS events in vivo. These reporters show a differential tissue-specific expression of certain transcripts and reveal that expression of some of the them can be changed by the application of the exogenous hormone. Finally, based on the characterized AS event of the PIN7 auxin efflux carrier, we designed a system that allows a rapid genetic screening for the factors upstream of this AS event. Our innovative toolset can be therefore highly useful for exploring novel regulatory nodes of hormonal pathways and potentially helpful for plant researchers focusing on developmental aspects of AS.

Indexed as

AHP6alternative splicingArabidopsisauxinbrassinosteroidscytokininsD-amino acid oxidaseDWF4genetic screenPIN7

Identifiers

PMID32650629
PMCPMC7412054
OpenAlexW3041777390

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.