Evidence map›Paper›PMID 32647372›Full record

ArticleCommunications biology2020

Reciprocal H3.3 gene editing identifies K27M and G34R mechanisms in pediatric glioma including NOTCH signaling.

Kuang-Yui Chen, Kelly Bush, Rachel Herndon Klein, Vanessa Cervantes, Nichole Lewis, Aasim Naqvi, Angel M Carcaboso, Mirna Lechpammer, Paul S Knoepfler

Abstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kuang-Yui ChenDepartment of Cell Biology and Human Anatomy, University of California, Davis, CA, 95616, USA.ORCID http://orcid.org/0000-0003-0551-744X
Kelly BushDepartment of Cell Biology and Human Anatomy, University of California, Davis, CA, 95616, USA.
Rachel Herndon KleinDepartment of Cell Biology and Human Anatomy, University of California, Davis, CA, 95616, USA.
Vanessa CervantesDepartment of Cell Biology and Human Anatomy, University of California, Davis, CA, 95616, USA.
Nichole LewisDepartment of Cell Biology and Human Anatomy, University of California, Davis, CA, 95616, USA.
Aasim NaqviInstitute of Pediatric Regenerative Medicine, Shriners Hospital for Children Northern California, Sacramento, CA, 95817, USA.ORCID http://orcid.org/0000-0002-3623-9035
Angel M CarcabosoInstitut de Recerca Sant Joan de Déu, Barcelona, Spain.ORCID http://orcid.org/0000-0002-8485-426X
Mirna LechpammerGenome Center, University of California, Davis, CA, 95616, USA.
Paul S KnoepflerDepartment of Cell Biology and Human Anatomy, University of California, Davis, CA, 95616, USA. knoepfler@ucdavis.edu.ORCID http://orcid.org/0000-0001-5444-334X

Funding

UC Davis Biology ProgramR25GM056765 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI GOMES, ALDRIN V. · 1998 to 2019
$9.7M
Training Program in Oncogenic Signals and Chromosome BiologyT32CA108459 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI HEYER, WOLF-DIETRICH · 2006 to 2020
$3.6M
Targeting the Mutant H3.3 Pathway in GliomaR01NS106878 · NINDS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KNOEPFLER, PAUL S · 2018 to 2022
$2.1M
Targeting a Novel H3.3 Epigenetic Switch to Regulate Health and DiseaseR01GM116919 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KNOEPFLER, PAUL S · 2016 to 2019
$1.4M
NCI NIH HHS T32 CA108459NCI NIH HHS T32CA108459NIGMS NIH HHS R01 GM116919NIGMS NIH HHS R25 GM056765NINDS NIH HHS R01 NS106878
6 · The paper itself

Abstract

Histone H3.3 mutations are a hallmark of pediatric gliomas, but their core oncogenic mechanisms are not well-defined. To identify major effectors, we used CRISPR-Cas9 to introduce H3.3K27M and G34R mutations into previously H3.3-wildtype brain cells, while in parallel reverting the mutations in glioma cells back to wildtype. ChIP-seq analysis broadly linked K27M to altered H3K27me3 activity including within super-enhancers, which exhibited perturbed transcriptional function. This was largely independent of H3.3 DNA binding. The K27M and G34R mutations induced several of the same pathways suggesting key shared oncogenic mechanisms including activation of neurogenesis and NOTCH pathway genes. H3.3 mutant gliomas are also particularly sensitive to NOTCH pathway gene knockdown and drug inhibition, reducing their viability in culture. Reciprocal editing of cells generally produced reciprocal effects on tumorgenicity in xenograft assays. Overall, our findings define common and distinct K27M and G34R oncogenic mechanisms, including potentially targetable pathways.

Indexed as

Gene EditingGene Expression Regulation, NeoplasticMutationAnimalsApoptosisBiomarkers, TumorBrain NeoplasmsCell ProliferationChildFemaleGliomaGlycineHistonesHumansLysineMaleBiomarkers, TumorGlycineHistonesLysineReceptors, Notch

Identifiers

PMID32647372
PMCPMC7347881

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.