ArticleNature medicine2020
Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling.
Open access · bronzeAbstract read
In one paragraph
Article in Nature medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 177 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed, 1 pooled it
8.6field-weighted citation impact, top 2% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
177 citing papers in PubMed, 1 synthesis or guideline pooled it, 378 citations in OpenAlex.
- Assessment of basic reproductive number for COVID-19 at global level: A meta-analysis.Medicine · 2021Pooled it
- Real-time spatiotemporal tracking of infectious outbreaks in confined environments with a host-pathogen agent-based system.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Methods for safely sharing dual-use genetic data.Frontiers in microbiology · 2026Article
- Comparing Genome Sequencing Methods to Reconstruct the Spread of Piscine Myocarditis Virus in Ireland.Journal of fish diseases · 2025Article
- Increased GII.3[P12] norovirus outbreaks and viral whole genome analysis in Beijing, China during 2021 and 2023.Gut pathogens · 2025Article
- Multi-scale phylodynamic modelling of rapid punctuated pathogen evolution.PLoS computational biology · 2025Article
- Estimating the deferred value of pathogen genomic data for secondary use.Scientific data · 2025Article
- A tube-based biosensor for DNA and RNA detection.Science advances · 2025Article
- Determinants of SARS-CoV-2 outcomes in patients with cancer vs controls without cancer: a multivariable meta-analysis with genomic imputation.EClinicalMedicine · 2025Article
- Article
- SARS-CoV-2 introductions to the island of Ireland: a phylogenetic and geospatiotemporal study of infection dynamics.Genome medicine · 2024Article
- BharatSim: An agent-based modelling framework for India.PLoS computational biology · 2024Article
- Article
- Quantifying the uncertainty of LLM hallucination spreading in complex adaptive social networks.Scientific reports · 2024Article
- Estimates of early outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data.Proceedings of the National Academy of Sciences of the United States of America · 2024Article
- Application of Genomic Epidemiology of Pathogens to Farmed Yellowtail Fish Mycobacteriosis in Kyushu, Japan.Microbes and environments · 2024Article
- A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs.Microbiology spectrum · 2023Article
- Infection and Vaccine Induced Spike Antibody Responses Against SARS-CoV-2 Variants of Concern in COVID-19-Naïve Children and Adults.Journal of clinical immunology · 2023Article
- Population-Based Severe Acute Respiratory Syndrome Coronavirus 2 Whole-Genome Sequencing and Contact Tracing During the Coronavirus Disease 2019 Pandemic in Switzerland.The Journal of infectious diseases · 2023Article
- Evolution of Sequence and Structure of SARS-CoV-2 Spike Protein: A Dynamic Perspective.ACS omega · 2023Review
117 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
24 authors at 4 institutions in 1 country.
Rebecca J Rockett *Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0003-4329-5198
Alicia Arnott *Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0003-2637-8936
Connie LamMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0003-0998-5400
Rosemarie SadsadMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0003-2488-953X
Verlaine TimmsMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0002-3883-4428
Karen-Ann GrayMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0001-8887-6426
John-Sebastian EdenMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0003-1374-3551
Sheryl ChangCentre for Complex Systems, Faculty of Engineering, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0002-6119-828X
Mailie GallCentre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.ORCID http://orcid.org/0000-0001-7018-2426
Jenny DraperCentre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.ORCID http://orcid.org/0000-0002-6916-6442
Eby M SimCentre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.ORCID http://orcid.org/0000-0002-3716-7344
Nathan L BachmannCentre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, Westmead, New South Wales, Australia.ORCID http://orcid.org/0000-0003-2929-8544
Ian CarterCentre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.ORCID http://orcid.org/0000-0002-1911-3561
Kerri BasileCentre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.ORCID http://orcid.org/0000-0003-0647-4314
Roy ByunHealth Protection NSW, NSW Ministry of Health, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0001-6411-2536
Matthew V O'SullivanMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0001-8783-5323
Sharon C-A ChenMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Susan MaddocksCentre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.
Tania C SorrellMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Dominic E DwyerMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
Edward C HolmesMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0001-9596-3552
Jen KokMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0002-8796-283X
Mikhail ProkopenkoMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0002-4215-0344
Vitali SintchenkoMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia. vitali.sintchenko@sydney.edu.au.ORCID http://orcid.org/0000-0002-9261-3650
The University of Sydney · AUWestmead Hospital · AUNew South Wales Department of Health · AUTaronga Conservation Society Australia · AU
Funding
Department of Health | National Health and Medical Research Council (NHMRC) 1043225Department of Health | National Health and Medical Research Council (NHMRC) 1123879
Abstract
In January 2020, a novel betacoronavirus (family Coronaviridae), named severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was identified as the etiological agent of a cluster of pneumonia cases occurring in Wuhan City, Hubei Province, China
Indexed as
PandemicsBetacoronavirusCoronavirus InfectionsCOVID-19Genome, ViralHumansPneumonia, ViralSARS-CoV-2Systems AnalysisWhole Genome Sequencing
Identifiers
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.