Evidence map›Paper›PMID 32647312›Full record

ArticleScientific reports2020

Inhalation exposure to cigarette smoke and inflammatory agents induces epigenetic changes in the lung.

Christopher L Seiler, J Ung Min Song, Delshanee Kotandeniya, Jianji Chen, Thomas J Y Kono, Qiyuan Han, Mathia Colwell, Benjamin Auch, Aaron L Sarver, Pramod Upadhyaya and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

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  14. The Past and Future of Inflammation as a Target to Cancer Prevention.Cancer prevention research (Philadelphia, Pa.) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 2 countries.

Christopher L SeilerDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, 55455, USA.
J Ung Min SongDepartment of Veterinary Medicine, University of Minnesota, Minneapolis, MN, 55455, USA.
Delshanee KotandeniyaDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, 55455, USA.
Jianji ChenDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, 55455, USA.
Thomas J Y KonoMinnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN, 55455, USA.
Qiyuan HanDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, 55455, USA.
Mathia ColwellDepartment of Animal Science, University of Minnesota, Minneapolis, MN, 55455, USA.
Benjamin AuchGenomics Center, University of Minnesota, Minneapolis, MN, 55455, USA.
Aaron L SarverInstitute for Health Informatics, University of Minnesota, Minneapolis, MN, 55455, USA.
Pramod UpadhyayaMasonic Cancer Center, University of Minnesota, 2231 6th Street SE, 2-147 CCRB, Minneapolis, 55455, USA.
Yanan RenBiostatistics Core, University of Minnesota, Minneapolis, MN, 55455, USA.
Christopher FaulkDepartment of Animal Science, University of Minnesota, Minneapolis, MN, 55455, USA.
Silvio De FloraDepartment of Health Sciences, University of Genoa, 16132, Genoa, Italy.
Sebastiano La MaestraDepartment of Health Sciences, University of Genoa, 16132, Genoa, Italy.
Yue ChenDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, 55455, USA.
Fekadu KassieDepartment of Veterinary Medicine, University of Minnesota, Minneapolis, MN, 55455, USA.
Natalia Y TretyakovaDepartment of Medicinal Chemistry, University of Minnesota, Minneapolis, MN, 55455, USA. trety001@umn.edu.
University of Minnesota · USUniversity of Genoa · IT

Funding

Untargeted Adductomics to Characterize Ethnic Differences in the Exposome of SmokersP01CA138338 · NCI · UNIVERSITY OF MINNESOTA · PI STEPHEN S HECHT · 2010 to 2026
$33.4M
Smoking-Induced Epigenetic Changes in the Lung: Role of DNA DemethylationR01CA095039 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI TRETYAKOVA, NATALIA Y · 2003 to 2022
$3.6M
Bioinformatics approaches to solve the "Missing Driver" problem in solid tumorsR50CA211249 · NCI · UNIVERSITY OF MINNESOTA · PI SARVER, AARON L · 2016 to 2020
$565k
Sequence Distribution of Tabacco Carcinogen-DNA AdductsR56CA095039 · NCI · UNIVERSITY OF MINNESOTA · PI TRETYAKOVA, NATALIA Y · 2007 to 2007
$237k
NCI NIH HHS HHSN261201200015CNCI NIH HHS P01 CA138338NCI NIH HHS R01 CA095039NCI NIH HHS R50 CA211249NCI NIH HHS R56 CA095039
6 · The paper itself

Abstract

Smoking-related lung tumors are characterized by profound epigenetic changes including scrambled patterns of DNA methylation, deregulated histone acetylation, altered gene expression levels, distorted microRNA profiles, and a global loss of cytosine hydroxymethylation marks. Here, we employed an enhanced version of bisulfite sequencing (RRBS/oxRRBS) followed by next generation sequencing to separately map DNA epigenetic marks 5-methyl-dC and 5-hydroxymethyl-dC in genomic DNA isolated from lungs of A/J mice exposed whole-body to environmental cigarette smoke for 10 weeks. Exposure to cigarette smoke significantly affected the patterns of cytosine methylation and hydroxymethylation in the lungs. Differentially hydroxymethylated regions were associated with inflammatory response/disease, organismal injury, and respiratory diseases and were involved in regulation of cellular development, function, growth, and proliferation. To identify epigenetic changes in the lung associated with exposure to tobacco carcinogens and inflammation, A/J mice were intranasally treated with the tobacco carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK), the inflammatory agent lipopolysaccharide (LPS), or both. NNK alone caused minimal epigenetic alterations, while exposure either to LPS or NNK/LPS in combination led to increased levels of global cytosine methylation and formylation, reduced cytosine hydroxymethylation, decreased histone acetylation, and altered expression levels of multiple genes. Our results suggest that inflammatory processes are responsible for epigenetic changes contributing to lung cancer development.

Indexed as

Epigenesis, GeneticInhalation ExposureAnimalsCarcinogensCell ProliferationChromatography, High Pressure LiquidCpG IslandsCytosineDNADNA MethylationFemaleHigh-Throughput Nucleotide SequencingHistonesInflammationLungLung NeoplasmsCarcinogensCytosineDNAHistoneshydrogen sulfiteNitrosaminesSmokeSulfites

Identifiers

PMID32647312
PMCPMC7347915
OpenAlexW3041617645

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.