Evidence map›Paper›PMID 32645098›Full record

ArticlePLoS neglected tropical diseases2020

Genetic diversity and neutral selection in Plasmodium vivax erythrocyte binding protein correlates with patient antigenicity.

Jin-Hee Han, Jee-Sun Cho, Jessica J Y Ong, Ji-Hoon Park, Myat Htut Nyunt, Edwin Sutanto, Hidayat Trimarsanto, Beyene Petros, Abraham Aseffa, Sisay Getachew and 14 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Natural genetic diversity of the DBL domain of a novel member of the Plasmodium vivax erythrocyte binding-like proteins (EBP2) in the Amazon rainforest.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 13 institutions in 11 countries.

Jin-Hee HanDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.
Jee-Sun ChoSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore.
Jessica J Y OngDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.ORCID 0000-0002-5096-8728
Ji-Hoon ParkDepartment of Medical Environmental Biology and Tropical Medicine, School of Medicine, Kangwon National University, Chuncheon, Gangwon-do, Republic of Korea.
Myat Htut NyuntDepartment of Medical Research, Yangon, Myanmar.ORCID 0000-0002-2026-8026
Edwin SutantoEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Hidayat TrimarsantoEijkman Institute for Molecular Biology, Jakarta, Indonesia.
Beyene PetrosCollege of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia.
Abraham AseffaArmauer Hansen Research Institute, Jimma Road, Addis Ababa, Ethiopia.
Sisay GetachewCollege of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia.
Kanlaya SriprawatShoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Thailand.
Nicholas M AnsteyGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia.
Matthew J GriggGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia.
Bridget E BarberGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia.
Timothy WilliamInfectious Diseases Society Sabah-Menzies School of Health Research Clinical Research Unit, Sabah, Malaysia.
Gao QiJiangsu Institute of Parasitic Diseases, Wuxi, Jiangsu, People's Republic of China.
Yaobao LiuJiangsu Institute of Parasitic Diseases, Wuxi, Jiangsu, People's Republic of China.
Richard D PearsonBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Old Road Campus, Oxford, United Kingdom.
Sarah AuburnGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia.
Ric N PriceGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, Australia.ORCID 0000-0003-2000-2874
Francois NostenShoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Thailand.
Laurent RéniaSingapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore.
Bruce RussellDepartment of Microbiology and Immunology, University of Otago, Dunedin, New Zealand.ORCID 0000-0003-2333-4348
Eun-Taek HanDepartment of Medical Environmental Biology and Tropical Medicine, School of Medicine, Kangwon National University, Chuncheon, Gangwon-do, Republic of Korea.ORCID 0000-0003-1962-7199
Mahidol University · THCharles Darwin University · AUKangwon National University · KRAgency for Science, Technology and Research · SGArmauer Hansen Research Institute · ETEijkman Institute for Molecular Biology · IDUniversity of Otago · NZAddis Ababa University · ETJiangsu Institute of Parasitic Diseases · CNMyanmar Oxford Clinical Research Unit · MMQueen Elizabeth Hospital · MYSoochow University · CNWellcome Sanger Institute · GB

Funding

Comparative incidence and clinical spectrum of Plasmodium knowlesi malaria, a longitudinal study in Sabah, MalaysiaR01AI116472 · NIAID · INFECTIOUS DISEASE SOCIETY KOTA KINABALU · PI WILLIAM, TIMOTHY · 2015 to 2019
$682k
NIAID NIH HHS R01 AI116472Wellcome Trust 200909/Z/16/Z
6 · The paper itself

Abstract

Plasmodium vivax is the most widespread and difficult to treat cause of human malaria. The development of vaccines against the blood stages of P. vivax remains a key objective for the control and elimination of vivax malaria. Erythrocyte binding-like (EBL) protein family members such as Duffy binding protein (PvDBP) are of critical importance to erythrocyte invasion and have been the major target for vivax malaria vaccine development. In this study, we focus on another member of EBL protein family, P. vivax erythrocyte binding protein (PvEBP). PvEBP was first identified in Cambodian (C127) field isolates and has subsequently been showed its preferences for binding reticulocytes which is directly inhibited by antibodies. We analysed PvEBP sequence from 316 vivax clinical isolates from eight countries including China (n = 4), Ethiopia (n = 24), Malaysia (n = 53), Myanmar (n = 10), Papua New Guinea (n = 16), Republic of Korea (n = 10), Thailand (n = 174), and Vietnam (n = 25). PvEBP gene exhibited four different phenotypic clusters based on the insertion/deletion (indels) variation. PvEBP-RII (179-479 aa.) showed highest polymorphism similar to other EBL family proteins in various Plasmodium species. Whereas even though PvEBP-RIII-V (480-690 aa.) was the most conserved domain, that showed strong neutral selection pressure for gene purifying with significant population expansion. Antigenicity of both of PvEBP-RII (16.1%) and PvEBP-RIII-V (21.5%) domains were comparatively lower than other P. vivax antigen which expected antigens associated with merozoite invasion. Total IgG recognition level of PvEBP-RII was stronger than PvEBP-RIII-V domain, whereas total IgG inducing level was stronger in PvEBP-RIII-V domain. These results suggest that PvEBP-RII is mainly recognized by natural IgG for innate protection, whereas PvEBP-RIII-V stimulates IgG production activity by B-cell for acquired immunity. Overall, the low antigenicity of both regions in patients with vivax malaria likely reflects genetic polymorphism for strong positive selection in PvEBP-RII and purifying selection in PvEBP-RIII-V domain. These observations pose challenging questions to the selection of EBP and point out the importance of immune pressure and polymorphism required for inclusion of PvEBP as a vaccine candidate.

Indexed as

Genetic VariationAmino Acid SequenceAntibodies, ProtozoanAsiaHumansImmunity, HumoralMalaria, VivaxPlasmodium vivaxPolymorphism, GeneticProtozoan ProteinsSelection, GeneticSequence AlignmentAntibodies, ProtozoanProtozoan Proteins

Identifiers

PMID32645098
PMCPMC7347095
OpenAlexW3041642436

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.