Evidence map›Paper›PMID 32643222›Full record

ArticleProtein science : a publication of the Protein Society2020

An allosteric pathway explains beneficial fitness in yeast for long-range mutations in an essential TIM barrel enzyme.

Yvonne H Chan, Konstantin B Zeldovich, Charles R Matthews

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Evolution, folding, and design of TIM barrels and related proteins.Current opinion in structural biology · 2021
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Yvonne H ChanDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, USA.ORCID 0000-0002-3422-8164
Konstantin B ZeldovichProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Charles R MatthewsDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts, USA.ORCID 0000-0002-8717-4972
Institut Pasteur · FRUniversity of Massachusetts Chan Medical School · US

Funding

MUTAGENESIS AS A PROBE OF THE FOLDING OF TRP SYNTHASER01GM023303 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BILSEL, OSMAN, MATTHEWS, C ROBERT · 1985 to 2017
$5.4M
NIGMS NIH HHS R01 GM023303NIH HHS GM23303
6 · The paper itself

Abstract

Protein evolution proceeds by a complex response of organismal fitness to mutations that can simultaneously affect protein stability, structure, and enzymatic activity. To probe the relationship between genotype and phenotype, we chose a fundamental paradigm for protein evolution, folding, and design, the (βα)

Indexed as

Models, MolecularProtein FoldingAllosteric RegulationProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaccharomyces cerevisiae Proteinsallosteric pathwaybiophysicsenergy networkfitnessprotein designprotein engineeringTIM barrel

Identifiers

PMID32643222
PMCPMC7454521
OpenAlexW3041263664

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.