Evidence map›Paper›PMID 32641089›Full record

ArticleBMC genomics2020

Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality.

A Zombardo, C Crosatti, P Bagnaresi, L Bassolino, N Reshef, S Puccioni, P Faccioli, A Tafuri, M Delledonne, A Fait and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 42 citations in OpenAlex.

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  14. Differential Response of Grapevine to Infection with 'International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

A ZombardoCREA Research Centre for Viticulture and Enology, viale Santa Margherita 80, 52100, Arezzo, Italy.
C CrosattiCREA Research Centre for Genomics and Bioinformatics, via San Protaso 302, 29017, Fiorenzuola d'Arda, PC, Italy.
P BagnaresiCREA Research Centre for Genomics and Bioinformatics, via San Protaso 302, 29017, Fiorenzuola d'Arda, PC, Italy.
L BassolinoCREA Research Centre for Genomics and Bioinformatics, via San Protaso 302, 29017, Fiorenzuola d'Arda, PC, Italy.
N ReshefFrench Associates institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, 84990, Israel.
S PuccioniCREA Research Centre for Viticulture and Enology, viale Santa Margherita 80, 52100, Arezzo, Italy.
P FaccioliCREA Research Centre for Genomics and Bioinformatics, via San Protaso 302, 29017, Fiorenzuola d'Arda, PC, Italy.
A TafuriCREA Research Centre for Genomics and Bioinformatics, via San Protaso 302, 29017, Fiorenzuola d'Arda, PC, Italy.
M DelledonneDepartment of Biotechnologies, University of Verona, Strada le Grazie 15, 37134, Verona, Italy.
A FaitFrench Associates institute for Agriculture and Biotechnology of Drylands, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, 84990, Israel.
P StorchiCREA Research Centre for Viticulture and Enology, viale Santa Margherita 80, 52100, Arezzo, Italy.
L CattivelliCREA Research Centre for Genomics and Bioinformatics, via San Protaso 302, 29017, Fiorenzuola d'Arda, PC, Italy.
E MicaCREA Research Centre for Genomics and Bioinformatics, via San Protaso 302, 29017, Fiorenzuola d'Arda, PC, Italy. erica.mica@crea.gov.it.ORCID http://orcid.org/0000-0002-3536-4248
Ben-Gurion University of the Negev · ILAzienda Ospedaliera Ospedale Maggiore · ITResearch Centre for Cereal and Industrial Crops · ITUniversity of Florence · ITUniversity of Verona · IT

Funding

Ministero delle Politiche Agricole Alimentari e Forestali DM-7303-1/11009/2011
6 · The paper itself

Abstract

backgroundIn viticulture, rootstock genotype plays a critical role to improve scion physiology, berry quality and to adapt grapevine (Vitis vinifera L.) to different environmental conditions. This study aimed at investigating the effect of two different rootstocks (1103 Paulsen - P - and Mgt 101-14 - M) in comparison with not grafted plants - NGC - on transcriptome (RNA-seq and small RNA-seq) and chemical composition of berry skin in Pinot noir, and exploring the influence of rootstock-scion interaction on grape quality. Berry samples, collected at veraison and maturity, were investigated at transcriptional and biochemical levels to depict the impact of rootstock on berry maturation.

resultsRNA- and miRNA-seq analyses highlighted that, at veraison, the transcriptomes of the berry skin are extremely similar, while variations associated with the different rootstocks become evident at maturity, suggesting a greater diversification at transcriptional level towards the end of the ripening process. In the experimental design, resembling standard agronomic growth conditions, the vines grafted on the two different rootstocks do not show a high degree of diversity. In general, the few genes differentially expressed at veraison were linked to photosynthesis, putatively because of a ripening delay in not grafted vines, while at maturity the differentially expressed genes were mainly involved in the synthesis and transport of phenylpropanoids (e.g. flavonoids), cell wall loosening, and stress response. These results were supported by some differences in berry phenolic composition detected between grafted and not grafted plants, in particular in resveratrol derivatives accumulation.

conclusionsTranscriptomic and biochemical data demonstrate a stronger impact of 1103 Paulsen rootstock than Mgt 101-14 or not grafted plants on ripening processes related to the secondary metabolite accumulations in berry skin tissue. Interestingly, the MYB14 gene, involved in the feedback regulation of resveratrol biosynthesis was up-regulated in 1103 Paulsen thus supporting a putative greater accumulation of stilbenes in mature berries.

Indexed as

FruitGene OntologyGenome, PlantMicroRNAsPhenolsPlant RootsRNA-SeqSecondary MetabolismVitisWeatherMicroRNAsPhenolsBerry ripeningGrapevinemiRNARNA-seqRootstockSecondary metabolismTranscriptomicVitis vinifera

Identifiers

PMID32641089
PMCPMC7341580
OpenAlexW3041666668

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.