Evidence map›Paper›PMID 32639515›Full record

ArticleAmerican journal of epidemiology2020

Bayesian Pathway Analysis for Complex Interactions.

James W Baurley, Anders Kjærsgaard, Michael E Zwick, Deirdre P Cronin-Fenton, Lindsay J Collin, Per Damkier, Stephen Hamilton-Dutoit, Timothy L Lash, Thomas P Ahern

Abstract read
In one paragraph

Article in American journal of epidemiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

James W Baurley
Anders Kjærsgaard
Michael E Zwick
Deirdre P Cronin-Fenton
Lindsay J Collin
Per Damkier
Stephen Hamilton-Dutoit
Timothy L Lash
Thomas P Ahern

Funding

Winship Cancer Institute Cancer Center Support GrantP30CA138292 · NCI · EMORY UNIVERSITY · PI Suresh S Ramalingam · 2009 to 2026
$47.5M
Vermont Center on Behavior and HealthP20GM103644 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI HIGGINS, STEPHEN T · 2013 to 2022
$21.3M
New and integrated perspectives on modification of tamoxifen effectivenessR01CA166825 · NCI · EMORY UNIVERSITY · PI LASH, TIMOTHY L. · 2013 to 2017
$2.8M
Smokescreen Translational (TL) Analysis PlatformR44AA027675 · NIAAA · BIOREALM · PI BAURLEY, JAMES WILLIAM, BERGEN, ANDREW W · 2018 to 2020
$1.7M
Improving Reproducibility by Incorporating UncertaintyR01LM013049 · NLM · EMORY UNIVERSITY · PI LASH, TIMOTHY L. · 2019 to 2022
$1.1M
Modification of tamoxifen effectiveness by gene polymorphisms and other drugsR01CA118708 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LASH, TIMOTHY L. · 2006 to 2009
$963k
Biologic and Patient Variation Affecting Breast Cancer Treatment EfficacyF31CA239566 · NCI · EMORY UNIVERSITY · PI COLLIN, LINDSAY JANE · 2019 to 2020
$53k
NCI NIH HHS F31 CA239566NCI NIH HHS P30 CA138292NCI NIH HHS R01 CA118708NCI NIH HHS R01 CA166825NIAAA NIH HHS R44 AA027675NIGMS NIH HHS P20 GM103644NLM NIH HHS R01 LM013049
6 · The paper itself

Abstract

Modern epidemiologic studies permit investigation of the complex pathways that mediate effects of social, behavioral, and molecular factors on health outcomes. Conventional analytical approaches struggle with high-dimensional data, leading to high likelihoods of both false-positive and false-negative inferences. Herein, we describe a novel Bayesian pathway analysis approach, the algorithm for learning pathway structure (ALPS), which addresses key limitations in existing approaches to complex data analysis. ALPS uses prior information about pathways in concert with empirical data to identify and quantify complex interactions within networks of factors that mediate an association between an exposure and an outcome. We illustrate ALPS through application to a complex gene-drug interaction analysis in the Predictors of Breast Cancer Recurrence (ProBe CaRe) Study, a Danish cohort study of premenopausal breast cancer patients (2002-2011), for which conventional analyses severely limit the quality of inference.

Indexed as

AlgorithmsBayes TheoremPharmacogenomic TestingAntineoplastic Agents, HormonalBreast NeoplasmsDrug Resistance, NeoplasmFemaleHumansTamoxifenAntineoplastic Agents, HormonalTamoxifenBayesian analysisbreast neoplasmspharmacogeneticstamoxifen

Identifiers

PMID32639515
PMCPMC7822643

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.