Evidence map›Paper›PMID 32636467›Full record

ArticleBritish journal of cancer2020

Systematic analysis reveals a functional role for STAMBPL1 in the epithelial-mesenchymal transition process across multiple carcinomas.

Gorbatchev Ambroise, Ting-Ting Yu, Boxi Zhang, Merve Kacal, Yuqing Hao, Andre L Queiroz, Amanda T Ouchida, Cecilia Lindskog, Erik Norberg, Helin Vakifahmetoglu-Norberg

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  9. A Method for Coexpression Analysis.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  10. A Method to Identify Potential Prognostic Markers Across Distinct Tumor Types.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Gorbatchev Ambroise *Department of Physiology and Pharmacology, Karolinska Institutet, Solnavägen 9, Biomedicum, 17165, Stockholm, Sweden.
Ting-Ting Yu *Department of Physiology and Pharmacology, Karolinska Institutet, Solnavägen 9, Biomedicum, 17165, Stockholm, Sweden.
Boxi Zhang *Department of Physiology and Pharmacology, Karolinska Institutet, Solnavägen 9, Biomedicum, 17165, Stockholm, Sweden.
Merve Kacal *Department of Physiology and Pharmacology, Karolinska Institutet, Solnavägen 9, Biomedicum, 17165, Stockholm, Sweden.
Yuqing HaoDepartment of Physiology and Pharmacology, Karolinska Institutet, Solnavägen 9, Biomedicum, 17165, Stockholm, Sweden.
Andre L QueirozDepartment of Physiology and Pharmacology, Karolinska Institutet, Solnavägen 9, Biomedicum, 17165, Stockholm, Sweden.
Amanda T OuchidaDepartment of Physiology and Pharmacology, Karolinska Institutet, Solnavägen 9, Biomedicum, 17165, Stockholm, Sweden.
Cecilia LindskogDepartment of Immunology, Genetics and Pathology, Rudbeck Laboratory, Uppsala University, 75185, Uppsala, Sweden.
Erik NorbergDepartment of Physiology and Pharmacology, Karolinska Institutet, Solnavägen 9, Biomedicum, 17165, Stockholm, Sweden. Erik.norberg@ki.se.
Helin Vakifahmetoglu-NorbergDepartment of Physiology and Pharmacology, Karolinska Institutet, Solnavägen 9, Biomedicum, 17165, Stockholm, Sweden. Helin.Norberg@ki.se.ORCID http://orcid.org/0000-0002-1797-2063
Karolinska Institutet · SEUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDeubiquitinating enzymes (DUBs) are linked to cancer progression and dissemination, yet less is known about their regulation and impact on epithelial-mesenchymal transition (EMT).

methodsAn integrative translational approach combining systematic computational analyses of The Cancer Genome Atlas cancer cohorts with CRISPR genetics, biochemistry and immunohistochemistry methodologies to identify and assess the role of human DUBs in EMT.

resultsWe identify a previously undiscovered biological function of STAM-binding protein like 1 (STAMBPL1) deubiquitinase in the EMT process in lung and breast carcinomas. We show that STAMBPL1 expression can be regulated by mutant p53 and that its catalytic activity is required to affect the transcription factor SNAI1. Accordingly, genetic depletion and CRISPR-mediated gene knockout of STAMBPL1 leads to marked recovery of epithelial markers, SNAI1 destabilisation and impaired migratory capacity of cancer cells. Reversely, STAMBPL1 expression reprogrammes cells towards a mesenchymal phenotype. A significant STAMBPL1-SNAI1 co-signature was observed across multiple tumour types. Importantly, STAMBPL1 is highly expressed in metastatic tissues compared to matched primary tumour of the same lung cancer patient and its expression predicts poor prognosis.

conclusionsOur study provides a novel concept of oncogenic regulation of a DUB and presents a new role and predictive value of STAMBPL1 in the EMT process across multiple carcinomas.

Indexed as

Epithelial-Mesenchymal TransitionBreast NeoplasmsCell Line, TumorDeubiquitinating EnzymesFemaleHumansLung NeoplasmsPeptide HydrolasesSnail Family Transcription FactorsTumor Suppressor Protein p53Deubiquitinating EnzymesPeptide HydrolasesSNAI1 protein, humanSnail Family Transcription FactorsSTAMBPL1 protein, humanTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID32636467
PMCPMC7524718
OpenAlexW3039839642

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.