Evidence map›Paper›PMID 32636380›Full record

ArticleNature communications2020

Cryo-EM structure of arabinosyltransferase EmbB from Mycobacterium smegmatis.

Yong Zi Tan, José Rodrigues, James E Keener, Ruixiang Blake Zheng, Richard Brunton, Brian Kloss, Sabrina I Giacometti, Ana L Rosário, Lei Zhang, Michael Niederweis and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Bacterial cell envelope-targeting antibiotics.Nature reviews. Microbiology · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Anti-tuberculosis drug developmentFrontiers in microbiology · 2022
    Review
  13. Conquer by cryo-EM without physically dividing.Biochemical Society transactions · 2021
    Review
  14. Article
  15. Review
  16. Review
  17. Tuberculosis: Past, present and future of the treatment and drug discovery research.Current research in pharmacology and drug discovery · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 4 countries.

Yong Zi TanDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY, 10032, USA.ORCID http://orcid.org/0000-0001-6656-6320
José RodriguesInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), 2780-157, Oeiras, Portugal.ORCID http://orcid.org/0000-0003-0829-9054
James E KeenerDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, 85721, USA.
Ruixiang Blake ZhengDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.
Richard BruntonDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.
Brian KlossCenter on Membrane Protein Production and Analysis, New York Structural Biology Center, New York, NY, 10027, USA.ORCID http://orcid.org/0000-0003-0130-8739
Sabrina I GiacomettiDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY, 10032, USA.
Ana L RosárioInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), 2780-157, Oeiras, Portugal.
Lei ZhangDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.
Michael NiederweisDepartment of Microbiology, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.ORCID http://orcid.org/0000-0003-4068-8092
Oliver B ClarkeDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY, 10032, USA.ORCID http://orcid.org/0000-0003-1876-196X
Todd L LowaryDepartment of Chemistry, University of Alberta, Edmonton, Alberta, T6G 2G2, Canada.ORCID http://orcid.org/0000-0002-8331-8211
Michael T MartyDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, 85721, USA.ORCID http://orcid.org/0000-0001-8115-1772
Margarida ArcherInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), 2780-157, Oeiras, Portugal.ORCID http://orcid.org/0000-0001-8419-5420
Clinton S PotterNational Resource for Automated Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, New York, NY, 10027, USA.
Bridget CarragherNational Resource for Automated Molecular Microscopy, Simons Electron Microscopy Center, New York Structural Biology Center, New York, NY, 10027, USA. bcarr@nysbc.org.ORCID http://orcid.org/0000-0002-0624-5020
Filippo ManciaDepartment of Physiology and Cellular Biophysics, Columbia University, New York, NY, 10032, USA. fm123@cumc.columbia.edu.
New York Structural Biology Center · USUniversidade Nova de Lisboa · PTUniversity of Alberta · CAColumbia University · USUniversity of Alabama at Birmingham · USUniversity of Arizona · USColumbia University Irving Medical Center · US

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI SCOTT, EMILY E · 1985 to 2011
$38.9M
TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Training (303-338)P41GM116799 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI HENDRICKSON, WAYNE A. · 2016 to 2020
$7.1M
Structural basis of integral membrane enzyme functionR35GM132120 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Filippo Mancia · 2019 to 2026
$3.7M
Unravelling Membrane Protein-Lipid Interactions using Nanodiscs and Mass SpectrometryR35GM128624 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Michael T Marty · 2018 to 2026
$3.6M
Lipid biosynthesis and modification by integral-membrane enzymesR01GM111980 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANCIA, FILIPPO · 2015 to 2018
$2.2M
Acquisition of Detector for JEOL 3200 FSC Electron MicroscopeS10OD019994 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI CARRAGHER, BRIDGET OLIVIA · 2015 to 2015
$600k
Structural basis of phosphoinositide biosynthesis in Mycobacterium tuberculosisR21AI119672 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANCIA, FILIPPO · 2015 to 2016
$440k
NCRR NIH HHS P41 RR001209NIAID NIH HHS R21 AI119672NIGMS NIH HHS P41 GM103310NIGMS NIH HHS P41 GM116799NIGMS NIH HHS R01 GM111980NIGMS NIH HHS R35 GM128624NIGMS NIH HHS R35 GM132120NIH HHS S10 OD019994
6 · The paper itself

Abstract

Arabinosyltransferase B (EmbB) belongs to a family of membrane-bound glycosyltransferases that build the lipidated polysaccharides of the mycobacterial cell envelope, and are targets of anti-tuberculosis drug ethambutol. We present the 3.3 Å resolution single-particle cryo-electron microscopy structure of Mycobacterium smegmatis EmbB, providing insights on substrate binding and reaction mechanism. Mutations that confer ethambutol resistance map mostly around the putative active site, suggesting this to be the location of drug binding.

Indexed as

Antitubercular AgentsCatalytic DomainCryoelectron MicroscopyDrug Resistance, BacterialEthambutolLipidsMutationMycobacterium smegmatisMycobacterium tuberculosisPentosyltransferasesPolysaccharidesProtein BindingAntitubercular AgentsEmbB protein, Mycobacterium tuberculosisEthambutolLipidsPentosyltransferasesPolysaccharides

Identifiers

PMID32636380
PMCPMC7341804
OpenAlexW3039647328

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.