Evidence map›Paper›PMID 32633759›Full record

ArticleNucleic acids research2020

Bypass of DNA interstrand crosslinks by a Rev1-DNA polymerase ζ complex.

Rachel Bezalel-Buch, Young K Cheun, Upasana Roy, Orlando D Schärer, Peter M Burgers

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. eLife · 2024
    Article
  7. Article
  8. Article
  9. The Catalytic Activity of Human REV1 on Undamaged and Damaged DNA.International journal of molecular sciences · 2024
    Article
  10. Article
  11. Review
  12. Synthesis of Oligonucleotides Containing Trans Mitomycin C DNA Adducts at NChemistry (Weinheim an der Bergstrasse, Germany) · 2021
    Article
  13. Article
  14. Article
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Rachel Bezalel-BuchDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, Saint Louis, MO, USA.
Young K CheunCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.
Upasana RoyDepartment of Chemistry, Stony Brook University, Stony Book, NY 11794, USA.
Orlando D SchärerCenter for Genomic Integrity, Institute for Basic Science, Ulsan 44919, Republic of Korea.
Peter M BurgersDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, Saint Louis, MO, USA.
Institute for Basic Science · KRWashington University in St. Louis · USStony Brook University · US

Funding

MECHANISMS OF DNA REPLICATION AND MAINTENANCE IN EUKARYOTESR35GM118129 · NIGMS · WASHINGTON UNIVERSITY · PI BURGERS, PETER M · 2016 to 2025
$6.7M
NIGMS NIH HHS R35 GM118129
6 · The paper itself

Abstract

DNA polymerase ζ (Pol ζ) and Rev1 are essential for the repair of DNA interstrand crosslink (ICL) damage. We have used yeast DNA polymerases η, ζ and Rev1 to study translesion synthesis (TLS) past a nitrogen mustard-based interstrand crosslink (ICL) with an 8-atom linker between the crosslinked bases. The Rev1-Pol ζ complex was most efficient in complete bypass synthesis, by 2-3 fold, compared to Pol ζ alone or Pol η. Rev1 protein, but not its catalytic activity, was required for efficient TLS. A dCMP residue was faithfully inserted across the ICL-G by Pol η, Pol ζ, and Rev1-Pol ζ. Rev1-Pol ζ, and particularly Pol ζ alone showed a tendency to stall before the ICL, whereas Pol η stalled just after insertion across the ICL. The stalling of Pol η directly past the ICL is attributed to its autoinhibitory activity, caused by elongation of the short ICL-unhooked oligonucleotide (a six-mer in our study) by Pol η providing a barrier to further elongation of the correct primer. No stalling by Rev1-Pol ζ directly past the ICL was observed, suggesting that the proposed function of Pol ζ as an extender DNA polymerase is also required for ICL repair.

Indexed as

Chromosome StructuresDNADNA DamageDNA-Directed DNA PolymeraseDNA RepairDNA ReplicationMultiprotein ComplexesNitrogen Mustard CompoundsNucleotidyltransferasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsY-Family DNA PolymerasesDNADNA-Directed DNA PolymeraseDNA polymerase zetaMultiprotein ComplexesNitrogen Mustard CompoundsNucleotidyltransferasesRad30 proteinREV1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsY-Family DNA Polymerases

Identifiers

PMID32633759
PMCPMC7470978
OpenAlexW3041766988

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.