Evidence map›Paper›PMID 32633489›Full record

ArticleAnalytical chemistry2020

Enabling Flow-Based Kinetic Off-Rate Selections Using a Microfluidic Enrichment Device.

William E Evenson, Wan-Zhen Sophie Lin, Kenmond Pang, Alexander T Czaja, Farzad Jalali-Yazdi, Terry T Takahashi, Noah Malmstadt, Richard W Roberts

Abstract read
In one paragraph

Article in Analytical chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

William E EvensonDepartment of Chemistry, University of Southern California, 3620 McClintock Avenue, SGM 418, Los Angeles, California 90089, United States.
Wan-Zhen Sophie LinMork Family Department of Chemical Engineering and Materials Science, University of Southern California, 925 Bloom Walk, HED 216, Los Angeles, California 90089, United States.ORCID 0000-0003-4942-1706
Kenmond PangMork Family Department of Chemical Engineering and Materials Science, University of Southern California, 925 Bloom Walk, HED 216, Los Angeles, California 90089, United States.
Alexander T CzajaDepartment of Biomedical Engineering, University of Southern California, 1042 Downey Way, Denney Research Center (DRB) 140, Los Angeles, California 90089, United States.ORCID 0000-0001-8314-8366
Farzad Jalali-YazdiMork Family Department of Chemical Engineering and Materials Science, University of Southern California, 925 Bloom Walk, HED 216, Los Angeles, California 90089, United States.
Terry T TakahashiDepartment of Chemistry, University of Southern California, 3620 McClintock Avenue, SGM 418, Los Angeles, California 90089, United States.
Noah MalmstadtDepartment of Chemistry, University of Southern California, 3620 McClintock Avenue, SGM 418, Los Angeles, California 90089, United States.ORCID 0000-0002-1786-2614
Richard W RobertsDepartment of Chemistry, University of Southern California, 3620 McClintock Avenue, SGM 418, Los Angeles, California 90089, United States.ORCID 0000-0002-8587-5097

Funding

A Target-Directed Reagent Pipeline via Microfluidic mRNA DisplayR21CA204708 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MALMSTADT, NOAH, ROBERTS, RICHARD W · 2017 to 2019
$604k
NCI NIH HHS R21 CA204708
6 · The paper itself

Abstract

Modern genomic sequencing efforts are identifying potential diagnostic and therapeutic targets more rapidly than existing methods can generate the peptide- and protein-based ligands required to study them. To address this problem, we have developed a microfluidic enrichment device (MFED) enabling kinetic off-rate selection without the use of exogenous competitor. We tuned the conditions of the device (bed volume, flow rate, immobilized target) such that modest, readily achievable changes in flow rates favor formation or dissociation of target-ligand complexes based on affinity. Simple kinetic equations can be used to describe the behavior of ligand binding in the MFED and the kinetic rate constants observed agree with independent measurements. We demonstrate the utility of the MFED by showing a 4-fold improvement in enrichment compared to standard selection. The MFED described here provides a route to simultaneously bias pools toward high-affinity ligands while reducing the demand for target-protein to less than a nanomole per selection.

Indexed as

Lab-On-A-Chip DevicesKineticsLigandsMicrofluidic Analytical TechniquesProtein BindingProteinsRNA, MessengerTime FactorsLigandsProteinsRNA, Messenger

Identifiers

PMID32633489
PMCPMC10368462

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.