Evidence map›Paper›PMID 32632248›Full record

ArticleNature microbiology2020

Collective interactions augment influenza A virus replication in a host-dependent manner.

Kara L Phipps, Ketaki Ganti, Nathan T Jacobs, Chung-Young Lee, Silvia Carnaccini, Maria C White, Miglena Manandhar, Brett E Pickett, Gene S Tan, Lucas M Ferreri and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  8. Virion aggregation shapes infection dynamics and evolutionary potential.bioRxiv : the preprint server for biology · 2025
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  18. High-throughput droplet-based analysis of influenza A virus genetic reassortment by single-virus RNA sequencing.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Kara L PhippsDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
Ketaki Ganti *Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-9687-3505
Nathan T Jacobs *Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
Chung-Young Lee *Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.
Silvia CarnacciniDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, GA, USA.
Maria C WhiteDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-9410-1798
Miglena ManandharJ. Craig Venter Institute, La Jolla, CA, USA.
Brett E PickettJ. Craig Venter Institute, La Jolla, CA, USA.
Gene S TanJ. Craig Venter Institute, La Jolla, CA, USA.
Lucas M FerreriDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, GA, USA.
Daniel R PerezDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, GA, USA.ORCID http://orcid.org/0000-0002-6569-5689
Anice C LowenDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA, USA. anice.lowen@emory.edu.ORCID http://orcid.org/0000-0002-9829-112X
Emory University · USUniversity of Georgia · USJ. Craig Venter Institute · USBrigham Young University · US

Funding

The J. Craig Venter Institute Genome Center for Infectious DiseasesU19AI110819 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI TAN, GENE · 2014 to 2018
$29.7M
Host dependence of influenza A virus spatio-temporal dynamicsR01AI127799 · NIAID · EMORY UNIVERSITY · PI Anice C Lowen · 2017 to 2026
$4.5M
Antimicrobial Resistance and Therapeutic Discovery Training ProgramT32AI106699 · NIAID · EMORY UNIVERSITY · PI Graeme L Conn, Joanna B Goldberg · 2014 to 2026
$2.7M
NIAID NIH HHS HHSN272201400004CNIAID NIH HHS HHSN272201400008CNIAID NIH HHS R01 AI127799NIAID NIH HHS T32 AI106699NIAID NIH HHS U19 AI110819
6 · The paper itself

Abstract

Infection with a single influenza A virus (IAV) is only rarely sufficient to initiate productive infection. Instead, multiple viral genomes are often required in a given cell. Here, we show that the reliance of IAV on multiple infection can form an important species barrier. Namely, we find that avian H9N2 viruses representative of those circulating widely at the poultry-human interface exhibit acute dependence on collective interactions in mammalian systems. This need for multiple infection is greatly reduced in the natural host. Quantification of incomplete viral genomes showed that their complementation accounts for the moderate reliance on multiple infection seen in avian cells but not the added reliance seen in mammalian cells. An additional form of virus-virus interaction is needed in mammals. We find that the PA gene segment is a major driver of this phenotype and that both viral replication and transcription are affected. These data indicate that multiple distinct mechanisms underlie the reliance of IAV on multiple infection and underscore the importance of virus-virus interactions in IAV infection, evolution and emergence.

Indexed as

AnimalsBirdsChickensCoturnixDisease Models, AnimalDogsFemaleGenome, ViralGuinea PigsHost-Pathogen InteractionsHost SpecificityHumansInfluenza A virusInfluenza A Virus, H9N2 SubtypeInfluenza, HumanInfluenza in Birds

Identifiers

PMID32632248
PMCPMC7484227
OpenAlexW3038335442

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.