Evidence map›Paper›PMID 32632186›Full record

ArticleNature chemistry2020

Structural snapshots of the minimal PKS system responsible for octaketide biosynthesis.

Alois Bräuer, Qiuqin Zhou, Gina L C Grammbitter, Maximilian Schmalhofer, Michael Rühl, Ville R I Kaila, Helge B Bode, Michael Groll

Abstract read
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In one paragraph

Article in Nature chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 56 citations in OpenAlex.

  1. Review
  2. Crystal structure of the type VI secretion system adaptor protein Tla3 from Pseudomonas aeruginosa.Acta crystallographica. Section F, Structural biology communications · 2026
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  4. Review
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  12. Analysis of the Setomimycin Biosynthetic Gene Cluster fromInternational journal of molecular sciences · 2024
    Article
  13. Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  14. Article
  15. Article
  16. Review
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Alois BräuerCenter for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Technische Universität München, Garching, Germany.
Qiuqin ZhouMolekulare Biotechnologie, Goethe Universität Frankfurt, Frankfurt am Main, Germany.
Gina L C GrammbitterMolekulare Biotechnologie, Goethe Universität Frankfurt, Frankfurt am Main, Germany.
Maximilian SchmalhoferCenter for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Technische Universität München, Garching, Germany.ORCID http://orcid.org/0000-0003-4994-6166
Michael RühlMolekulare Biotechnologie, Goethe Universität Frankfurt, Frankfurt am Main, Germany.
Ville R I KailaCenter for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Technische Universität München, Garching, Germany.ORCID http://orcid.org/0000-0003-4464-6324
Helge B BodeMolekulare Biotechnologie, Goethe Universität Frankfurt, Frankfurt am Main, Germany. h.bode@bio.uni-frankfurt.de.ORCID http://orcid.org/0000-0001-6048-5909
Michael GrollCenter for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Technische Universität München, Garching, Germany. michael.groll@tum.de.ORCID http://orcid.org/0000-0002-1660-340X
Goethe University Frankfurt · DECenter for Integrated Protein Science Munich · DEStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type II polyketide synthases (PKSs) are multi-enzyme complexes that produce secondary metabolites of medical relevance. Chemical backbones of such polyketides are produced by minimal PKS systems that consist of a malonyl transacylase, an acyl carrier protein and an α/β heterodimeric ketosynthase. Here, we present X-ray structures of all ternary complexes that constitute the minimal PKS system for anthraquinone biosynthesis in Photorhabdus luminescens. In addition, we characterize this invariable core using molecular simulations, mutagenesis experiments and functional assays. We show that malonylation of the acyl carrier protein is accompanied by major structural rearrangements in the transacylase. Principles of an ongoing chain elongation are derived from the ternary complex with a hexaketide covalently linking the heterodimeric ketosynthase with the acyl carrier protein. Our results for the minimal PKS system provide mechanistic understanding of PKSs and a fundamental basis for engineering PKS pathways for future applications.

Indexed as

Acyl Carrier ProteinAnthraquinonesBinding SitesCrystallography, X-RayDensity Functional TheoryMalonatesMolecular Dynamics SimulationMultigene FamilyMutagenesisPhotorhabdusPolyketidesPolyketide SynthasesProtein Structure, QuaternaryRecombinant ProteinsAcyl Carrier ProteinAnthraquinonesMalonatesmalonic acidPolyketidesPolyketide SynthasesRecombinant Proteins

Identifiers

PMID32632186
OpenAlexW3040171571

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.