ArticleScientific reports2020
The dynamic evolution of mobile open reading frames in plastomes of Hymenophyllum Sm. and new insight on Hymenophyllum coreanum Nakai.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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9 citing papers in PubMed, 9 citations in OpenAlex.
- Comparative plastome analysis of the Vandenboschia radicans complex in Korea: insights into its evolutionary history.BMC plant biology · 2026Article
- Evolutionary mobility and genetic dynamics of MORFFO genes: shuttling among ancient plant lineages.The New phytologist · 2026Article
- Sequencing of the complete plastome of the thermal adder's-tongue fern,Mitochondrial DNA. Part B, Resources · 2024Article
- The complete chloroplast genome of the neo-allotetraploid fern,Mitochondrial DNA. Part B, Resources · 2024Article
- The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2023Article
- Dynamic hybridization between two spleenworts,Frontiers in plant science · 2023Article
- A Large Intergenic Spacer Leads to the Increase in Genome Size and Sequential Gene Movement around IR/SC Boundaries in the Chloroplast Genome ofInternational journal of molecular sciences · 2022Article
- Structural Variation of Plastomes Provides Key Insight Into the Deep Phylogeny of Ferns.Frontiers in plant science · 2022Article
- Structural Mutations in the Organellar Genomes ofInternational journal of molecular sciences · 2021Article
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this study, four plastomes of Hymenophyllum, distributed in the Korean peninsula, were newly sequenced and phylogenomic analysis was conducted to reveal (1) the evolutionary history of plastomes of early-diverging fern species at the species level, (2) the importance of mobile open reading frames in the genus, and (3) plastome sequence divergence providing support for H. coreanum to be recognized as an independent species distinct from H. polyanthos. In addition, 1C-values of H. polyanthos and H. coreanum were measured to compare the genome size of both species and to confirm the diversification between them. The rrn16-trnV intergenic regions in the genus varied in length caused by Mobile Open Reading Frames in Fern Organelles (MORFFO). We investigated enlarged noncoding regions containing MORFFO throughout the fern plastomes and found that they were strongly associated with tRNA genes or palindromic elements. Sequence identity between plastomes of H. polyanthos and H. coreanum is quite low at 93.35% in the whole sequence and 98.13% even if the variation in trnV-rrn16 intergenic spacer was ignored. In addition, different genome sizes were found for these species based on the 1C-value. Consequently, there is no reason to consider them as a conspecies.
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