Evidence map›Paper›PMID 32631829›Full record

ArticleDevelopment (Cambridge, England)2020

Cell type- and stage-specific expression of Otx2 is regulated by multiple transcription factors and

Candace S Y Chan, Nicolas Lonfat, Rong Zhao, Alexander E Davis, Liang Li, Man-Ru Wu, Cheng-Hui Lin, Zhe Ji, Constance L Cepko, Sui Wang

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Candace S Y ChanDepartment of Ophthalmology, Mary M. and Sash A. Spencer Center for Vision Research, Byers Eye Institute, Stanford University, Stanford, CA 94304, USA.
Nicolas LonfatDepartments of Genetics and Ophthalmology, Blavatnik Institute, Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0001-7078-3301
Rong ZhaoDepartments of Genetics and Ophthalmology, Blavatnik Institute, Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA.
Alexander E DavisDepartment of Ophthalmology, Mary M. and Sash A. Spencer Center for Vision Research, Byers Eye Institute, Stanford University, Stanford, CA 94304, USA.
Liang LiDepartment of Ophthalmology, Mary M. and Sash A. Spencer Center for Vision Research, Byers Eye Institute, Stanford University, Stanford, CA 94304, USA.
Man-Ru WuDepartment of Ophthalmology, Mary M. and Sash A. Spencer Center for Vision Research, Byers Eye Institute, Stanford University, Stanford, CA 94304, USA.
Cheng-Hui LinDepartment of Ophthalmology, Mary M. and Sash A. Spencer Center for Vision Research, Byers Eye Institute, Stanford University, Stanford, CA 94304, USA.
Zhe JiDepartment of Bioengineering, Northwestern University, Evanston, IL 60208, USA.
Constance L CepkoDepartments of Genetics and Ophthalmology, Blavatnik Institute, Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115, USA cepko@genetics.med.harvard.edu suiwang@stanford.edu.ORCID 0000-0002-9945-6387
Sui WangDepartment of Ophthalmology, Mary M. and Sash A. Spencer Center for Vision Research, Byers Eye Institute, Stanford University, Stanford, CA 94304, USA cepko@genetics.med.harvard.edu suiwang@stanford.edu.ORCID 0000-0003-1563-9117
Stanford University · USHoward Hughes Medical Institute · USCentral South University · CNNorthwestern University · US

Funding

Determination of Cone Photoreceptor FateR01EY029771 · NEI · HARVARD MEDICAL SCHOOL · PI CEPKO, CONSTANCE L · 2019 to 2023
$2.1M
Dissect regulation of RNA translation in human cancersR00CA207865 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JI, ZHE · 2018 to 2020
$705k
NCI NIH HHS R00 CA207865NEI NIH HHS R01 EY029771
6 · The paper itself

Abstract

Transcription factors (TFs) are often used repeatedly during development and homeostasis to control distinct processes in the same and/or different cellular contexts. Considering the limited number of TFs in the genome and the tremendous number of events that need to be regulated, re-use of TFs is necessary. We analyzed how the expression of the homeobox TF, orthodenticle homeobox 2 (Otx2), is regulated in a cell type- and stage-specific manner during development in the mouse retina. We identified seven

Indexed as

AnimalsChromatinG2 PhaseHEK293 CellsHomeodomain ProteinsHumansMiceMutagenesisOtx Transcription FactorsPhotoreceptor Cells, VertebrateProtein BindingRegulatory Elements, TranscriptionalRetinaRNA InterferenceRNA, Small InterferingSOXB1 Transcription FactorsChromatincone rod homeobox proteinHomeodomain ProteinsOtx2 protein, mouseOtx Transcription FactorsRNA, Small InterferingSox2 protein, mouseSOXB1 Transcription FactorsTrans-ActivatorsTranscription FactorsCis-regulatory moduleCrxOtx2Sox2Transcription factor

Identifiers

PMID32631829
PMCPMC7406324
OpenAlexW3040474536

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.