Evidence map›Paper›PMID 32630601›Full record

ArticleViruses2020

Development and Evaluation of a duo SARS-CoV-2 RT-qPCR Assay Combining Two Assays Approved by the World Health Organization Targeting the Envelope and the RNA-Dependant RNA Polymerase (RdRp) Coding Regions.

Laura Pezzi, Remi N Charrel, Laetitia Ninove, Antoine Nougairede, Gregory Molle, Bruno Coutard, Guillaume Durand, Isabelle Leparc-Goffart, Xavier de Lamballerie, Laurence Thirion

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Detection of community-acquired respiratory viruses during COVID-19 pandemic in subtropical region in Japan.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
  7. Article
  8. Article
  9. Diversity and Genetic Reassortment of Keystone Virus in Mosquito Populations in Florida.The American journal of tropical medicine and hygiene · 2023
    Article
  10. Article
  11. Preclinical study of a DNA vaccine targeting SARS-CoV-2.Current research in translational medicine · 2022
    Article
  12. [SARS-CoV-2 antigen rapid tests].Pravention und Gesundheitsforderung · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Laura PezziUR7310, Laboratoire de Virologie, Université de Corse-Inserm, 20250 Corte, France.ORCID 0000-0001-7921-9221
Remi N CharrelUnité des Virus Émergents (UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), 13005 Marseille, France.ORCID 0000-0002-7675-8251
Laetitia NinoveUnité des Virus Émergents (UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), 13005 Marseille, France.
Antoine NougairedeUnité des Virus Émergents (UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), 13005 Marseille, France.
Gregory MolleUnité des Virus Émergents (UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), 13005 Marseille, France.
Bruno CoutardUnité des Virus Émergents (UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), 13005 Marseille, France.
Guillaume DurandUnité des Virus Émergents (UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), 13005 Marseille, France.ORCID 0000-0003-3348-9618
Isabelle Leparc-GoffartUnité des Virus Émergents (UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), 13005 Marseille, France.
Xavier de LamballerieUnité des Virus Émergents (UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), 13005 Marseille, France.
Laurence ThirionUnité des Virus Émergents (UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), 13005 Marseille, France.ORCID 0000-0003-4301-2944

Funding

Agence Nationale de la Recherche PREPMedVetH2020 European Institute of Innovation and Technology 823666H2020 Fast Track to Innovation 101003544H2020 Research Infrastructures 871029Institut National de la Santé et de la Recherche Médicale Reacting
6 · The paper itself

Abstract

The recent emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) worldwide has highlighted the importance of reliable and rapid diagnostic testing to prevent and control virus circulation. Dozens of monoplex in-house RT-qPCR assays are already available; however, the development of dual-target assays is suited to avoid false-negative results caused by polymorphisms or point mutations, that can compromise the accuracy of diagnostic and screening tests. In this study, two mono-target assays recommended by WHO (E-Sarbeco (enveloppe gene, Charite University, Berlin, Germany) and RdRp-IP4 (RdRp, Institut Pasteur, Paris, France)) were selected and combined in a unique robust test; the resulting duo SARS-CoV-2 RT-qPCR assay was compared to the two parental monoplex tests. The duo SARS-CoV-2 assay performed equally, or better, in terms of sensitivity, specificity, linearity and signal intensity. We demonstrated that combining two single systems into a dual-target assay (with or without an MS2-based internal control) did not impair performances, providing a potent tool adapted for routine molecular diagnosis in clinical microbiology laboratories.

Indexed as

BetacoronavirusCoronavirus Envelope ProteinsCoronavirus InfectionsCoronavirus RNA-Dependent RNA PolymeraseCOVID-19HumansPandemicsPneumonia, ViralReal-Time Polymerase Chain ReactionRNA-Dependent RNA PolymeraseRNA, ViralSARS-CoV-2Sensitivity and SpecificityViral Envelope ProteinsViral Nonstructural ProteinsWorld Health OrganizationCoronavirus Envelope ProteinsCoronavirus RNA-Dependent RNA Polymeraseenvelope protein, SARS-CoV-2NSP12 protein, SARS-CoV-2RNA-Dependent RNA PolymeraseRNA, ViralViral Envelope ProteinsViral Nonstructural ProteinscoronavirusCOVID-19diagnosisdiagnosticsemergingmolecularoutbreakpreparednessreal-time PCRrespiratoryresponseTaqMan

Identifiers

PMID32630601
PMCPMC7354606

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.