Evidence map›Paper›PMID 32627857›Full record

ArticlePrenatal diagnosis2020

A prospective study on rapid exome sequencing as a diagnostic test for multiple congenital anomalies on fetal ultrasound.

Nicole Corsten-Janssen, Katelijne Bouman, Janouk C D Diphoorn, Arjen J Scheper, Rianne Kinds, Julia El Mecky, Hanna Breet, Joke B G M Verheij, Ron Suijkerbuijk, Leonie K Duin and 6 more

Open access · hybridAbstract readEvaluation Study
In one paragraph

Article in Prenatal diagnosis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 3 pooled it
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 3 syntheses or guidelines pooled it, 47 citations in OpenAlex.

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  3. Fetal hydrops and the Incremental yield of Next-generation sequencing over standard prenatal Diagnostic testing (FIND) study: prospective cohort study and meta-analysis.Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 2 countries.

Nicole Corsten-JanssenDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.ORCID 0000-0002-9438-2374
Katelijne BoumanDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Janouk C D DiphoornDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Arjen J ScheperDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Rianne KindsDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Julia El MeckyDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Hanna BreetDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Joke B G M VerheijDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Ron SuijkerbuijkDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Leonie K DuinDepartment of Obstetrics, Gynecology and Prenatal Diagnosis, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.ORCID 0000-0003-4089-9973
Gwendolyn T R MantenDepartment of Obstetrics and Gynecology, Isala, Zwolle, The Netherlands.
Irene M van LangenDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Rolf H SijmonsDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Birgit Sikkema-RaddatzDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Helga WestersDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
Cleo C van DiemenDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.
University Medical Center Groningen · NLIsala · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveConventional genetic tests (quantitative fluorescent-PCR [QF-PCR] and single nucleotide polymorphism-array) only diagnose ~40% of fetuses showing ultrasound abnormalities. Rapid exome sequencing (rES) may improve this diagnostic yield, but includes challenges such as uncertainties in fetal phenotyping, variant interpretation, incidental unsolicited findings, and rapid turnaround times. In this study, we implemented rES in prenatal care to increase diagnostic yield.

methodsWe prospectively studied 55 fetuses. Inclusion criteria were: (a) two or more independent major fetal anomalies, (b) hydrops fetalis or bilateral renal cysts alone, or (c) one major fetal anomaly and a first-degree relative with the same anomaly. In addition to conventional genetic tests, we performed trio rES analysis using a custom virtual gene panel of ~3850 Online Mendelian Inheritance in Man (OMIM) genes.

resultsWe established a genetic rES-based diagnosis in 8 out of 23 fetuses (35%) without QF-PCR or array abnormalities. Diagnoses included MIRAGE (SAMD9), Zellweger (PEX1), Walker-Warburg (POMGNT1), Noonan (PTNP11), Kabuki (KMT2D), and CHARGE (CHD7) syndrome and two cases of Osteogenesis Imperfecta type 2 (COL1A1). In six cases, rES diagnosis aided perinatal management. The median turnaround time was 14 (range 8-20) days.

conclusionImplementing rES as a routine test in the prenatal setting is challenging but technically feasible, with a promising diagnostic yield and significant clinical relevance.

Indexed as

Exome SequencingAbnormalities, MultipleAdultDiagnostic Tests, RoutineFeasibility StudiesFemaleFetusGenetic TestingHumansInfant, NewbornMaleNetherlandsPolymerase Chain ReactionPolymorphism, Single NucleotidePredictive Value of TestsPregnancy

Identifiers

PMID32627857
PMCPMC7540374
OpenAlexW3040113462

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.