Evidence map›Paper›PMID 32624548›Full record

ArticleThe Journal of veterinary medical science2020

Identification of Newcastle disease virus P-gene editing using next-generation sequencing.

Xi Chen, Yanqing Jia, Shanhui Ren, Siqi Chen, Xiangwei Wang, Xiaolong Gao, Chongyang Wang, Fathalrhman E A Adam, Xinglong Wang, Zengqi Yang

Open access · diamondAbstract read
In one paragraph

Article in The Journal of veterinary medical science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Xi ChenCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province 712100, P.R. China.
Yanqing JiaDepartment of Animal Engineering, Yangling Vocational & Technical College, Yangling, Shaanxi Province 712100, P.R. China.
Shanhui RenCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province 712100, P.R. China.
Siqi ChenCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province 712100, P.R. China.
Xiangwei WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province 712100, P.R. China.
Xiaolong GaoCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province 712100, P.R. China.
Chongyang WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province 712100, P.R. China.
Fathalrhman E A AdamDepartment of Preventive Medicine and Public Health, Faculty of Veterinary Science, University of Nyala, P.O. Box: 155 Nyala, Sudan.
Xinglong WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province 712100, P.R. China.
Zengqi YangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province 712100, P.R. China.
North West Agriculture and Forestry University · CNNorthwest A&F University · CNUniversity of Nyala · SDYangzhou Vocational University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Avian paramyxoviruses 1 has the ability to edit its P gene to generate three amino-coterminal proteins (P, V and W), but its kinetic change is unclear. In this study, next-generation sequencing (NGS) was used to analyze the P-gene editing of Newcastle disease virus (NDV). Transcriptome analysis of chicken embryonic tissues and bursa of fabricius showed the P-gene editing frequencies were 45.46-52.70%. To investigate the rules of P-gene editing along time, the ratio of PVW was determined by PCR based deep sequencing at multiple time points in cells infected with velogenic and lentogenic strain respectively. The results confirmed similar editing frequencies with transcriptome data and the PVW ratios were stable along time among different NDVs, but had a greater V-gene transcript on velogenic strain infection (P<0.001), which were different from previous reports. Also, it was shown that the number of inserted G residues in P-derived transcripts was not limited to +9G, and +10G transcripts were identified. These results confirmed the NDV P-gene editing frequencies and provided a novel point of view on NDV P-gene editing with NDV virulence.

Indexed as

Chick EmbryoRNA EditingAnimalsBursa of FabriciusGene Expression ProfilingHigh-Throughput Nucleotide SequencingNewcastle DiseaseNewcastle disease virusPoultry DiseasesViral ProteinsViral Proteinsnext-generation sequencingP-gene editing frequenciestranscriptome analysisV-gene transcript

Identifiers

PMID32624548
PMCPMC7468068
OpenAlexW3040293341

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.