Evidence map›Paper›PMID 32623831›Full record

ArticleInternational journal of immunogenetics2020

A role for human leucocyte antigens in the susceptibility to SARS-Cov-2 infection observed in transplant patients.

Kay Poulton, Paul Wright, Pamela Hughes, Sinisa Savic, Matthew Welberry Smith, Malcolm Guiver, Muir Morton, David van Dellen, Eleni Tholouli, Robert Wynn and 1 more

Abstract read
In one paragraph

Article in International journal of immunogenetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Trial
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  7. Genes · 2024
    Article
  8. Narrative Review Explaining the Role ofInfectious disease reports · 2024
    Review
  9. Article
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  11. Article
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  15. Review
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  18. Study of HLA-A, -B, -C, -DRB1 and -DQB1 polymorphisms in COVID-19 patients.Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kay PoultonTransplantation Laboratory, Manchester Royal Infirmary, Manchester, UK.ORCID https://orcid.org/0000-0002-5608-8107
Paul WrightTransplantation Laboratory, Manchester Royal Infirmary, Manchester, UK.ORCID https://orcid.org/0000-0002-0516-3218
Pamela HughesTransplant Immunology, St James's University Hospital, Leeds, UK.
Sinisa SavicDepartment Immunology, St James's University Hospital, Leeds, UK.
Matthew Welberry SmithDepartment Renal Medicine, St James's University Hospital, Leeds, UK.
Malcolm GuiverDepartment Virology, Manchester Royal Infirmary, Manchester, UK.
Muir MortonDepartment Renal Medicine, Manchester Royal Infirmary, Manchester, UK.
David van DellenDepartment Renal Transplantation, Manchester Royal Infirmary, Manchester, UK.
Eleni TholouliDepartment Haematology, Manchester Royal Infirmary, Manchester, UK.
Robert WynnPaediatric BMT Unit, Royal Manchester Children's Hospital, Manchester, UK.
Brendan ClarkTransplant Immunology, St James's University Hospital, Leeds, UK.ORCID https://orcid.org/0000-0001-7243-1916

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We analysed data from 80 patients who tested positive for SARS-CoV-2 RNA who had previously been HLA typed to support transplantation. Data were combined from two adjacent centres in Manchester and Leeds to achieve a sufficient number for early analysis. HLA frequencies observed were compared against two control populations: first, against published frequencies in a UK deceased donor population (n = 10,000) representing the target population of the virus, and second, using a cohort of individuals from the combined transplant waiting lists of both centres (n = 308), representing a comparator group of unaffected individuals of the same demographic. We report a significant HLA association with HLA- DQB1*06 (53% vs. 36%; p < .012; OR 1.96; 95% CI 1.94-3.22) and infection. A bias towards an increased representation of HLA-A*26, HLA-DRB1*15, HLA-DRB1*10 and DRB1*11 was also noted but these were either only significant using the UK donor controls, or did not remain significant after correction for multiple tests. Likewise, HLA-A*02, HLA-B*44 and HLA-C*05 may exert a protective effect, but these associations did not remain significant after correction for multiple tests. This is relevant information for the clinical management of patients in the setting of the current SARS-CoV-2 pandemic and potentially in risk-assessing staff interactions with infected patients.

Indexed as

Histocompatibility TestingAllelesBetacoronavirusCoronavirus InfectionsCOVID-19Gene FrequencyGenetic Predisposition to DiseaseHLA-A AntigensHLA-B AntigensHLA-C AntigensHLA-DQ beta-ChainsHLA-DRB1 ChainsHumansOrgan TransplantationPandemicsPneumonia, ViralHLA-A AntigensHLA-B AntigensHLA-C AntigensHLA-DQB1 antigenHLA-DQ beta-ChainsHLA-DRB1 Chainscase/control studiesdisease associationdisease association studiesgeneticshistocompatibilityhuman leucocyte antigensimmune responseimmunologymolecularpopulationsevere acute respiratory syndromevirologyvirus

Identifiers

PMID32623831
PMCPMC7361549

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.