Evidence map›Paper›PMID 32621841›Full record

ArticleVirus research2020

Epitope-based peptide vaccines predicted against novel coronavirus disease caused by SARS-CoV-2.

Li Lin, Sun Ting, He Yufei, Li Wendong, Fan Yubo, Zhang Jing

Open access · hybridAbstract read
In one paragraph

Article in Virus research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 73 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. BCEDB: a linear B-cell epitopes database for SARS-CoV-2.Database : the journal of biological databases and curation · 2023
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Peptides for Vaccine Development.ACS applied bio materials · 2022
    Review
  20. Therapeutic peptides: current applications and future directions.Signal transduction and targeted therapy · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Li LinBeijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing, China; School of Biological Science and Medical Engineering, Beihang University, Beijing China.
Sun TingBeijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing, China; School of Biological Science and Medical Engineering, Beihang University, Beijing China.
He YufeiSchool of Biological Science and Medical Engineering, Beihang University, Beijing China.
Li WendongBeijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing, China; School of Biological Science and Medical Engineering, Beihang University, Beijing China.
Fan YuboBeijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing, China; School of Biological Science and Medical Engineering, Beihang University, Beijing China. Electronic address: yubofan@buaa.edu.cn.
Zhang JingBeijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing, China. Electronic address: jz2716@buaa.edu.cn.
Beijing Advanced Sciences and Innovation Center · CNBeihang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The outbreak of the 2019 novel coronavirus (SARS-CoV-2) has infected millions of people with a large number of deaths across the globe. The existing therapies are limited in dealing with SARS-CoV-2 due to the sudden appearance of the virus. Therefore, vaccines and antiviral medicines are in desperate need. We took immune-informatics approaches to identify B- and T-cell epitopes for surface glycoprotein (S), membrane glycoprotein (M) and nucleocapsid protein (N) of SARS-CoV-2, followed by estimating their antigenicity and interactions with the human leukocyte antigen (HLA) alleles. Allergenicity, toxicity, physiochemical properties analysis and stability were examined to confirm the specificity and selectivity of the epitope candidates. We identified a total of five B cell epitopes in RBD of S protein, seven MHC class-I, and 18 MHC class-II binding T-cell epitopes from S, M and N protein which showed non-allergenic, non-toxic and highly antigenic features and non-mutated in 55,179 SARS-CoV-2 virus strains until June 25, 2020. The epitopes identified here can be a potentially good candidate repertoire for vaccine development.

Indexed as

Amino Acid SequenceBetacoronavirusBinding SitesCoronavirus InfectionsCoronavirus M ProteinsCoronavirus Nucleocapsid ProteinsCOVID-19COVID-19 VaccinesEpitopes, B-LymphocyteEpitopes, T-LymphocyteHumansImmunogenicity, VaccineModels, MolecularNucleocapsid ProteinsPandemicsPhosphoproteinsCoronavirus M ProteinsCoronavirus Nucleocapsid ProteinsCOVID-19 VaccinesEpitopes, B-LymphocyteEpitopes, T-Lymphocytemembrane protein, SARS-CoV-2nucleocapsid phosphoprotein, SARS-CoV-2Nucleocapsid ProteinsPhosphoproteinsSpike Glycoprotein, CoronavirusViral Matrix ProteinsViral VaccinesB-cell epitopeImmune-informaticsSARS-CoV-2Spike proteinT-cell epitopeVaccine design

Identifiers

PMID32621841
PMCPMC7328648
OpenAlexW3040400333

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.