Evidence map›Paper›PMID 32621004›Full record

ArticleJournal of biomolecular NMR2020

NMR pseudocontact shifts in a symmetric protein homotrimer.

Thomas Müntener, Raphael Böhm, Kenneth Atz, Daniel Häussinger, Sebastian Hiller

Abstract read
In one paragraph

Article in Journal of biomolecular NMR, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Thomas MüntenerBiozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland.
Raphael BöhmBiozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland.
Kenneth AtzBiozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland.
Daniel HäussingerDepartment of Chemistry, University of Basel, St. Johanns-Ring 19, 4056, Basel, Switzerland.
Sebastian HillerBiozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland. sebastian.hiller@unibas.ch.ORCID http://orcid.org/0000-0002-6709-4684

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 310030B_185388
6 · The paper itself

Abstract

NMR pseudocontact shifts are a valuable tool for structural and functional studies of proteins. Protein multimers mediate key functional roles in biology, but methods for their study by pseudocontact shifts are so far not available. Paramagnetic tags attached to identical subunits in multimeric proteins cause a combined pseudocontact shift that cannot be described by the standard single-point model. Here, we report pseudocontact shifts generated simultaneously by three paramagnetic Tm-M7PyThiazole-DOTA tags to the trimeric molecular chaperone Skp and provide an approach for the analysis of this and related symmetric systems. The pseudocontact shifts were described by a "three-point" model, in which positions and parameters of the three paramagnetic tags were fitted. A good correlation between experimental data and predicted values was found, validating the approach. The study establishes that pseudocontact shifts can readily be applied to multimeric proteins, offering new perspectives for studies of large protein complexes by paramagnetic NMR spectroscopy.

Indexed as

Nuclear Magnetic Resonance, BiomolecularProtein MultimerizationAlgorithmsModels, MolecularModels, TheoreticalProtein ConformationProteinsRecombinant ProteinsStructure-Activity RelationshipProteinsRecombinant ProteinsChaperone SkpHomotrimerLanthanide chelating tagParamagnetismPseudocontact shiftSolution NMR spectroscopy

Identifiers

PMID32621004
PMCPMC7508745

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.