Evidence map›Paper›PMID 32620774›Full record

ArticleNature communications2020

Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways.

Michael Jakob Pichler, Chihaya Yamada, Bashar Shuoker, Camila Alvarez-Silva, Aina Gotoh, Maria Louise Leth, Erwin Schoof, Toshihiko Katoh, Mikiyasu Sakanaka, Takane Katayama and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 181 citations in OpenAlex.

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  19. Gut microbes · 2025
    Article
  20. 3'-Sialyllactose andGut microbes · 2025
    Article

41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Michael Jakob Pichler *Department of Biotechnology and Biomedicine, Technical University of Denmark, 2800, Lyngby, Denmark.ORCID http://orcid.org/0000-0003-3408-652X
Chihaya Yamada *Department of Biotechnology, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.
Bashar ShuokerDepartment of Biotechnology and Biomedicine, Technical University of Denmark, 2800, Lyngby, Denmark.
Camila Alvarez-SilvaNovo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 2200, Denmark.ORCID http://orcid.org/0000-0002-7905-2967
Aina GotohGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, 606-8502, Japan.
Maria Louise LethDepartment of Biotechnology and Biomedicine, Technical University of Denmark, 2800, Lyngby, Denmark.ORCID http://orcid.org/0000-0002-5668-2632
Erwin SchoofDepartment of Biotechnology and Biomedicine, Technical University of Denmark, 2800, Lyngby, Denmark.
Toshihiko KatohGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, 606-8502, Japan.ORCID http://orcid.org/0000-0002-7996-5619
Mikiyasu SakanakaFaculty of Bioresources and Environmental Sciences, Ishikawa Prefectural University, Nonoichi, Ishikawa, 921-8836, Japan.ORCID http://orcid.org/0000-0002-4223-0926
Takane KatayamaGraduate School of Biostudies, Kyoto University, Sakyo-ku, Kyoto, 606-8502, Japan.ORCID http://orcid.org/0000-0003-4009-7874
Chunsheng JinDepartment of Medical Biochemistry, University of Gothenburg, 413 90, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-0229-102X
Niclas G KarlssonDepartment of Medical Biochemistry, University of Gothenburg, 413 90, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-3045-2628
Manimozhiyan ArumugamNovo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, 2200, Denmark.ORCID http://orcid.org/0000-0002-0886-9101
Shinya FushinobuDepartment of Biotechnology, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.ORCID http://orcid.org/0000-0003-1346-6435
Maher Abou HachemDepartment of Biotechnology and Biomedicine, Technical University of Denmark, 2800, Lyngby, Denmark. maha@bio.dtu.dk.ORCID http://orcid.org/0000-0001-8250-1842
Technical University of Denmark · DKIshikawa Prefectural University · JPKyoto University · JPThe University of Tokyo · JPUniversity of Copenhagen · DKUniversity of Gothenburg · SELund University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The early life human gut microbiota exerts life-long health effects on the host, but the mechanisms underpinning its assembly remain elusive. Particularly, the early colonization of Clostridiales from the Roseburia-Eubacterium group, associated with protection from colorectal cancer, immune- and metabolic disorders is enigmatic. Here, we describe catabolic pathways that support the growth of Roseburia and Eubacterium members on distinct human milk oligosaccharides (HMOs). The HMO pathways, which include enzymes with a previously unknown structural fold and specificity, were upregulated together with additional glycan-utilization loci during growth on selected HMOs and in co-cultures with Akkermansia muciniphila on mucin, suggesting an additional role in enabling cross-feeding and access to mucin O-glycans. Analyses of 4599 Roseburia genomes underscored the preponderance and diversity of the HMO utilization loci within the genus. The catabolism of HMOs by butyrate-producing Clostridiales may contribute to the competitiveness of this group during the weaning-triggered maturation of the microbiota.

Indexed as

AkkermansiaBifidobacteriumButyratesColonEubacterialesEubacteriumGastrointestinal MicrobiomeHumansInfantInfant, NewbornMetabolismMilk, HumanMucinsOligosaccharidesPolysaccharidesVerrucomicrobiaButyratesMucinsOligosaccharidesPolysaccharides

Identifiers

PMID32620774
PMCPMC7335108
OpenAlexW3038605597

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.