Evidence map›Paper›PMID 32620120›Full record

ArticleBMC medical informatics and decision making2020

A risk calculator to inform the need for a prostate biopsy: a rapid access clinic cohort.

Amirhossein Jalali, Robert W Foley, Robert M Maweni, Keefe Murphy, Dara J Lundon, Thomas Lynch, Richard Power, Frank O'Brien, Kieran J O'Malley, David J Galvin and 3 more

Abstract read
In one paragraph

Article in BMC medical informatics and decision making, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  11. Microfluidics at Fiber Tip for Nanoliter Delivery and Sampling.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Amirhossein JalaliConway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin, Ireland. amir.jalali@ucd.ie.ORCID 0000-0001-7227-8261
Robert W FoleyConway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin, Ireland.
Robert M MaweniUCD School of Medicine, University College Dublin, Dublin, Ireland.
Keefe MurphyUCD School of Mathematics and Statistics, University College Dublin, Dublin, Ireland.
Dara J LundonConway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin, Ireland.
Thomas LynchDepartment of Urology, St. James University Hospital, Dublin, Ireland.
Richard PowerDepartment of Urology, Beaumont Hospital, Dublin, Ireland.
Frank O'BrienDepartment of Urology, University Hospital Waterford, Waterford, Ireland.
Kieran J O'MalleyDepartment of Urology, Mater Misericordiae University Hospital, Dublin, Ireland.
David J GalvinDepartment of Urology, Mater Misericordiae University Hospital, Dublin, Ireland.
Garrett C DurkanDepartment of Urology, University Hospital Galway, Galway, Ireland.
T Brendan MurphyUCD School of Mathematics and Statistics, University College Dublin, Dublin, Ireland.
R William WatsonConway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin, Ireland.

Funding

Health Research Board HRA-POR-2015-1116Irish Cancer Society (IE) PCI11WATUniversity College Dublin -
6 · The paper itself

Abstract

backgroundProstate cancer (PCa) represents a significant healthcare problem. The critical clinical question is the need for a biopsy. Accurate risk stratification of patients before a biopsy can allow for individualised risk stratification thus improving clinical decision making. This study aims to build a risk calculator to inform the need for a prostate biopsy.

methodsUsing the clinical information of 4801 patients an Irish Prostate Cancer Risk Calculator (IPRC) for diagnosis of PCa and high grade (Gleason ≥7) was created using a binary regression model including age, digital rectal examination, family history of PCa, negative prior biopsy and Prostate-specific antigen (PSA) level as risk factors. The discrimination ability of the risk calculator is internally validated using cross validation to reduce overfitting, and its performance compared with PSA and the American risk calculator (PCPT), Prostate Biopsy Collaborative Group (PBCG) and European risk calculator (ERSPC) using various performance outcome summaries. In a subgroup of 2970 patients, prostate volume was included. Separate risk calculators including the prostate volume (IPRCv) for the diagnosis of PCa (and high-grade PCa) was created.

resultsIPRC area under the curve (AUC) for the prediction of PCa and high-grade PCa was 0.6741 (95% CI, 0.6591 to 0.6890) and 0.7214 (95% CI, 0.7018 to 0.7409) respectively. This significantly outperforms the predictive ability of cancer detection for PSA (0.5948), PCPT (0.6304), PBCG (0.6528) and ERSPC (0.6502) risk calculators; and also, for detecting high-grade cancer for PSA (0.6623) and PCPT (0.6804) but there was no significant improvement for PBCG (0.7185) and ERSPC (0.7140). The inclusion of prostate volume into the risk calculator significantly improved the AUC for cancer detection (AUC = 0.7298; 95% CI, 0.7119 to 0.7478), but not for high-grade cancer (AUC = 0.7256; 95% CI, 0.7017 to 0.7495). The risk calculator also demonstrated an increased net benefit on decision curve analysis.

conclusionThe risk calculator developed has advantages over prior risk stratification of prostate cancer patients before the biopsy. It will reduce the number of men requiring a biopsy and their exposure to its side effects. The interactive tools developed are beneficial to translate the risk calculator into practice and allows for clarity in the clinical recommendations.

Indexed as

Prostatic NeoplasmsAgedBiopsyCohort StudiesHumansMaleMiddle AgedProstate-Specific AntigenRisk AssessmentProstate-Specific AntigenBinary logistic regression, cross-validation, RshinyBiopsyDecision-makingProstate CancerRisk calculator

Identifiers

PMID32620120
PMCPMC7333322

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.