Evidence map›Paper›PMID 32619491›Full record

ArticleStem cell reports2020

A Highly Phenotyped Open Access Repository of Alpha-1 Antitrypsin Deficiency Pluripotent Stem Cells.

Joseph E Kaserman, Killian Hurley, Mark Dodge, Carlos Villacorta-Martin, Marall Vedaie, Jyh-Chang Jean, Derek C Liberti, Marianne F James, Michelle I Higgins, Nora J Lee and 5 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07639996 (Natural Course and Molecular Basis of Alpha 1- Antitrypsin Deficiency-associated Liver Disease.), which is not on this map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT07639996 not yet recruitingnot on this mapstarted 2026, after this paper: background citation

Natural Course and Molecular Basis of Alpha 1- Antitrypsin Deficiency-associated Liver Disease.

TypeobservationalSponsorAssiut UniversityRan2026 to 2028Enrolled45ConditionsAlpha 1-antitrypsin Deficiency (AATD)ArmsMulti-omic spatial analysis
3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. A compact base editor rescues AATD-associated liver and lung disease in mouse models.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  6. Review
  7. Review
  8. Review
  9. Rationale and Design of the Alpha-1 Biomarkers Consortium Study.Chronic obstructive pulmonary diseases (Miami, Fla.) · 2025
    Article
  10. Article
  11. Article
  12. Reporter Alleles in hiPSCs: Visual Cues on Development and Disease.International journal of molecular sciences · 2024
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Joseph E KasermanCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA; The Pulmonary Center and Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Killian HurleyCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA; The Pulmonary Center and Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Mark DodgeCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA.
Carlos Villacorta-MartinCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA.
Marall VedaieCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA.
Jyh-Chang JeanCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA.
Derek C LibertiCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA.
Marianne F JamesCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA.
Michelle I HigginsCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA.
Nora J LeeCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA.
George R WashkoBrigham and Women's Hospital, Boston, MA 02118, USA.
Raul San Jose EsteparBrigham and Women's Hospital, Boston, MA 02118, USA.
Jeffrey TeckmanSaint Louis University, St Louis, MO 63104, USA.
Darrell N KottonCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA; The Pulmonary Center and Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Andrew A WilsonCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA 02118, USA; The Pulmonary Center and Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA. Electronic address: awilson@bu.edu.
Boston University · USBrigham and Women's Hospital · USSaint Louis University · US

Funding

BIOLOGY OF THE LUNG--MULTIDISCIPLINARY PROGRAMT32HL007035 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Darrell N. Kotton, JOSEPH P MIZGERD · 1985 to 2026
$24.3M
A National iPS Cell Network with Deep Phenotyping for Translational ResearchU01TR001810 · NCATS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI GILAD, YOAV, KOTTON, DARRELL N. · 2016 to 2020
$4.4M
Characterization of human hematopoietic and endodermal progenitors derived from iRC2HL101535 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI KOTTON, DARRELL N., MOSTOSLAVSKY, GUSTAVO · 2009 to 2010
$2.7M
A National Resource for Lung disease-specific iPS cellsR24HL123828 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI KOTTON, DARRELL N., MOSTOSLAVSKY, GUSTAVO · 2014 to 2018
$2.7M
Thyroid Hormone Signaling in Human HepatocytesR01DK117940 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI HOLLENBERG, ANTHONY N, WILSON, ANDREW A · 2019 to 2022
$2.7M
Personalized therapy for AATD-associated liver disease via IPS modelingR01DK101501 · NIDDK · BOSTON UNIVERSITY MEDICAL CAMPUS · PI WILSON, ANDREW A · 2015 to 2019
$2.4M
MoFlo Astrios EQ High Speed Cell SorterS10OD021587 · OD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SNYDER-CAPPIONE, JENNIFER E · 2017 to 2017
$600k
NCATS NIH HHS U01 TR001810NHLBI NIH HHS R24 HL123828NHLBI NIH HHS RC2 HL101535NHLBI NIH HHS T32 HL007035NIDDK NIH HHS R01 DK101501NIDDK NIH HHS R01 DK117940
6 · The paper itself

Abstract

Individuals with the genetic disorder alpha-1 antitrypsin deficiency (AATD) are at risk of developing lung and liver disease. Patient induced pluripotent stem cells (iPSCs) have been found to model features of AATD pathogenesis but only a handful of AATD patient iPSC lines have been published. To capture the significant phenotypic diversity of the patient population, we describe here the establishment and characterization of a curated repository of AATD iPSCs with associated disease-relevant clinical data. To highlight the utility of the repository, we selected a subset of iPSC lines for functional characterization. Selected lines were differentiated to generate both hepatic and lung cell lineages and analyzed by RNA sequencing. In addition, two iPSC lines were targeted using CRISPR/Cas9 editing to accomplish scarless repair. Repository iPSCs are available to investigators for studies of disease pathogenesis and therapeutic discovery.

Indexed as

Access to InformationDatabases as TopicAdolescentAdultAgedAged, 80 and overalpha 1-Antitrypsinalpha 1-Antitrypsin DeficiencyCell DifferentiationCell LineageCRISPR-Cas SystemsEndodermFemaleGene EditingGenetic LociGenotypealpha 1-AntitrypsinSERPINA1 protein, humanalpha-1 antitrypsin deficiencyhepatic-directed differentiationiPSC repositorylung progenitor-directed differentiation

Identifiers

PMID32619491
PMCPMC7363960
OpenAlexW3040450365

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.