Evidence map›Paper›PMID 32617704›Full record

ArticleThe AAPS journal2020

Saddle-Reset for Robust Parameter Estimation and Identifiability Analysis of Nonlinear Mixed Effects Models.

Henrik Bjugård Nyberg, Andrew C Hooker, Robert J Bauer, Yasunori Aoki

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Article in The AAPS journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  5. Metaheuristics for pharmacometrics.CPT: pharmacometrics & systems pharmacology · 2021
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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Henrik Bjugård NybergDepartment of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden.
Andrew C HookerDepartment of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden. andrew.hooker@farmbio.uu.se.
Robert J BauerPharmacometrics R&D, ICON CLINICAL RESEARCH LLC, Gaithersburg, Maryland, USA.
Yasunori AokiDepartment of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parameter estimation of a nonlinear model based on maximizing the likelihood using gradient-based numerical optimization methods can often fail due to premature termination of the optimization algorithm. One reason for such failure is that these numerical optimization methods cannot distinguish between the minimum, maximum, and a saddle point; hence, the parameters found by these optimization algorithms can possibly be in any of these three stationary points on the likelihood surface. We have found that for maximization of the likelihood for nonlinear mixed effects models used in pharmaceutical development, the optimization algorithm Broyden-Fletcher-Goldfarb-Shanno (BFGS) often terminates in saddle points, and we propose an algorithm, saddle-reset, to avoid the termination at saddle points, based on the second partial derivative test. In this algorithm, we use the approximated Hessian matrix at the point where BFGS terminates, perturb the point in the direction of the eigenvector associated with the lowest eigenvalue, and restart the BFGS algorithm. We have implemented this algorithm in industry standard software for nonlinear mixed effects modeling (NONMEM, version 7.4 and up) and showed that it can be used to avoid termination of parameter estimation at saddle points, as well as unveil practical parameter non-identifiability. We demonstrate this using four published pharmacometric models and two models specifically designed to be practically non-identifiable.

Indexed as

AlgorithmsNonlinear DynamicsChemistry, Pharmaceuticalestimation methodsNLMEparameter estimationpharmacometricspractical identifiability

Identifiers

PMID32617704
PMCPMC7373158

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.