Evidence map›Paper›PMID 32616763›Full record

ArticleScientific reports2020

A candidate multi-epitope vaccine against SARS-CoV-2.

Tamalika Kar, Utkarsh Narsaria, Srijita Basak, Debashrito Deb, Filippo Castiglione, David M Mueller, Anurag P Srivastava

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 196 papers.

0numbers the graph read from it
0cells of the map it votes in
196citing papers in PubMed
18.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

196 citing papers in PubMed, 332 citations in OpenAlex.

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  7. Designing a novel and effective multi-epitope subunit vaccine against human astrovirus using reverse vaccinology approach.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026
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136 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Tamalika Kar *Department of Life Sciences, Garden City University, Bangalore, Karnataka, India.
Utkarsh Narsaria *Department of Life Sciences, Garden City University, Bangalore, Karnataka, India.
Srijita Basak *Department of Life Sciences, Garden City University, Bangalore, Karnataka, India.
Debashrito Deb *Department of Life Sciences, Garden City University, Bangalore, Karnataka, India.
Filippo CastiglioneInstitute for Applied Computing, National Research Council of Italy, Via dei Taurini, Rome, Italy.
David M MuellerCenter for Genetic Diseases, The Chicago Medical School, Rosalind Franklin University of Medicine and Science, North Chicago, USA.
Anurag P SrivastavaDepartment of Life Sciences, Garden City University, Bangalore, Karnataka, India. anurag.srivastava@gardencity.university.ORCID http://orcid.org/0000-0003-3493-1375
Bangalore University · INInstitute for High Performance Computing and Networking · ITRosalind Franklin University of Medicine and Science · US

Funding

Structure and mechanism of the mitochondrial ATP synthase and Batten Disease gene product, Cln3pR35GM131731 · NIGMS · ROSALIND FRANKLIN UNIV OF MEDICINE & SCI · PI MUELLER, DAVID MICHAEL · 2019 to 2023
$2.2M
NIGMS NIH HHS R35 GM131731
6 · The paper itself

Abstract

In the past two decades, 7 coronaviruses have infected the human population, with two major outbreaks caused by SARS-CoV and MERS-CoV in the year 2002 and 2012, respectively. Currently, the entire world is facing a pandemic of another coronavirus, SARS-CoV-2, with a high fatality rate. The spike glycoprotein of SARS-CoV-2 mediates entry of virus into the host cell and is one of the most important antigenic determinants, making it a potential candidate for a vaccine. In this study, we have computationally designed a multi-epitope vaccine using spike glycoprotein of SARS-CoV-2. The overall quality of the candidate vaccine was validated in silico and Molecular Dynamics Simulation confirmed the stability of the designed vaccine. Docking studies revealed stable interactions of the vaccine with Toll-Like Receptors and MHC Receptors. The in silico cloning and codon optimization supported the proficient expression of the designed vaccine in E. coli expression system. The efficiency of the candidate vaccine to trigger an effective immune response was assessed by an in silico immune simulation. The computational analyses suggest that the designed multi-epitope vaccine is structurally stable which can induce specific immune responses and thus, can be a potential vaccine candidate against SARS-CoV-2.

Indexed as

Angiotensin-Converting Enzyme 2Antibody AffinityBetacoronavirusCoronavirus InfectionsCOVID-19Epitopes, B-LymphocyteEpitopes, T-LymphocyteHistocompatibility AntigensHumansMolecular Docking SimulationMolecular Dynamics SimulationPandemicsPeptidyl-Dipeptidase APhylogenyPneumonia, ViralProtein Structure, TertiaryACE2 protein, humanAngiotensin-Converting Enzyme 2Epitopes, B-LymphocyteEpitopes, T-LymphocyteHistocompatibility AntigensPeptidyl-Dipeptidase ASpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2TLR2 protein, humanTLR4 protein, humanToll-Like Receptor 2Toll-Like Receptor 4Viral Vaccines

Identifiers

PMID32616763
PMCPMC7331818
OpenAlexW3039821298

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.