Evidence map›Paper›PMID 32616057›Full record

ArticleBMC research notes2020

Moderate rate of transmitted resistance mutations to antiretrovirals and genetic diversity in newly HIV-1 patients diagnosed in Benin.

Edmond Tchiakpe, Rene K Keke, Nicole Vidal, Clément Ahoussinou, Olga Sekpe, Hermione G Dagba, Eric Gbaguidi, Conrad Tonoukouen, Aldric Afangnihoun, Moussa Bachabi and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Edmond TchiakpeNational Reference Laboratory of Health Program Fighting Against AIDS in Benin (LNR/PSLS), Health Ministry of Benin, BP 1258, Cotonou, Benin. tchiakpeedmond211170@gmail.com.
Rene K KekeNational Reference Laboratory of Health Program Fighting Against AIDS in Benin (LNR/PSLS), Health Ministry of Benin, BP 1258, Cotonou, Benin.
Nicole VidalUMI233-TransVIHMI, IRD (Institut de Recherche pour le développement), U1175 (INSERM) et Université de Montpellier, Montpellier, France.
Clément AhoussinouEpidemiologist, Socio-anthropologist, Consulting, Cotonou, Benin.
Olga SekpeNational Reference Laboratory of Health Program Fighting Against AIDS in Benin (LNR/PSLS), Health Ministry of Benin, BP 1258, Cotonou, Benin.
Hermione G DagbaNational Reference Laboratory of Health Program Fighting Against AIDS in Benin (LNR/PSLS), Health Ministry of Benin, BP 1258, Cotonou, Benin.
Eric GbaguidiHealth Program Fighting Against AIDS in Benin (PSLS), Health Ministry of Benin, Cotonou, Benin.
Conrad TonoukouenHealth Program Fighting Against AIDS in Benin (PSLS), Health Ministry of Benin, Cotonou, Benin.
Aldric AfangnihounCentre de Traitement Ambulatoire de l'Hôpital de zone de Suru Léré, Cotonou, Benin.
Moussa BachabiHealth Program Fighting Against AIDS in Benin (PSLS), Health Ministry of Benin, Cotonou, Benin.
Flore A GangboHealth Program Fighting Against AIDS in Benin (PSLS), Health Ministry of Benin, Cotonou, Benin.
Halimatou Diop-NdiayeInstitute for Health Research, Epidemiological Surveillance and Training of Senegal, Dakar, Senegal.
Coumba Toure-KaneInstitute for Health Research, Epidemiological Surveillance and Training of Senegal, Dakar, Senegal.
Progamme National Contre le Tuberculose · BJInstitute of Health Research, Epidemiological Surveillance and Training · SNAidjan-Lagos Corridor Organization · BJInserm · FRUniversité d'Abomey-Calavi · BJ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveSeventeen years after the start of the IBAARV (Beninese initiative for access to antiretrovirals), transmitted drug resistance mutations in ARV-naïve patients and HIV-1 genetic diversity were investigated in Benin.

resultsDrug resistance mutations were detected in (27/248; 10.9%) according to the WHO SDRM 2009 list, with a predominance of mutations directed against NNRTIs drugs (24/248; 10%). Phylogenetic and recombination analyses showed a predominance of CRF02_AG strains (165/248; 66.5%) and a high genetic diversity with five other variants and 39 URFs (15.7%) which contained portions of strains that co-circulate in Benin. Eight recent transmission chains revealed active ongoing transmission of HIV-1 strains among ARV-naïve patients. Our study showed a moderate primary drug resistance mutations rate and also provided recent data on the HIV-1 variants that circulate in Benin. Regular monitoring of primary drug resistance is required to adapt HIV-1 treatment strategies and adoption of new WHO recommendations in Benin.

Indexed as

AdolescentAdultAgedAged, 80 and overAnti-HIV AgentsBeninDrug Resistance, ViralFemaleGenetic VariationHIV-1HIV InfectionsHumansMaleMiddle AgedMutationPhylogenyAnti-HIV AgentsARV naïveBeninDrug-resistance mutationsGenetic diversityHIV-1

Identifiers

PMID32616057
PMCPMC7330984
OpenAlexW3040319715

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.