Evidence map›Paper›PMID 32614981›Full record

ArticleJournal of neurochemistry2021

Quantitative proteomic analysis of the frontal cortex in Alzheimer's disease.

Gajanan Sathe, Marilyn Albert, Jacqueline Darrow, Atsushi Saito, Juan Troncoso, Akhilesh Pandey, Abhay Moghekar

Open access · greenAbstract read
In one paragraph

Article in Journal of neurochemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 2 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 2 syntheses or guidelines pooled it, 65 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  5. Review
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  8. Midkine attenuates amyloid-β fibril assembly and plaque formation.Nature structural & molecular biology · 2025
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  17. Osteopontin: A novel marker of pre-symptomatic sporadic Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
    Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Gajanan SatheCenter for Molecular Medicine, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore, India.
Marilyn AlbertDepartment of Neurology and Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Jacqueline DarrowDepartment of Neurology and Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Atsushi SaitoDepartment of Pathology and Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Juan TroncosoDepartment of Pathology and Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Akhilesh PandeyMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Abhay MoghekarDepartment of Neurology and Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0001-9464-1551
Johns Hopkins University · US

Funding

Project 2 MeasurementU19AG033655 · NIA · JOHNS HOPKINS UNIVERSITY · PI JUAN TRONCOSO · 2014 to 2026
$51.5M
Understanding Mechanisms of a-synuclein pathologyP50NS038377 · NINDS · JOHNS HOPKINS UNIVERSITY · PI DAWSON, TED M. · 1998 to 2019
$38.8M
Research Education ComponentP30AG066507 · NIA · JOHNS HOPKINS UNIVERSITY · PI MARILYN S. ALBERT · 2020 to 2026
$29.3M
Fourier Transform Orbitrap Fusion Lumos Tribrid Mass Spectrometer with ETDS10OD021844 · OD · JOHNS HOPKINS UNIVERSITY · PI PANDEY, AKHILESH · 2016 to 2016
$1.1M
NIA NIH HHS P30 AG066507NIA NIH HHS U19AG03365NIA NIH HHS U19 AG033655NIH HHS S10 OD021844NIH HHS S10OD021844NINDS NIH HHS P50 NS038377NINDS NIH HHS P50NS38377Wellcome Trust
6 · The paper itself

Abstract

Alzheimer's disease (AD) is a chronic neurodegenerative disease characterized by intracellular formation of neurofibrillary tangles and extracellular deposition of β-amyloid protein (Aβ) in the extracellular matrix. The pathogenesis of AD has not yet been fully elucidated and little is known about global alterations in the brain proteome that are related to AD. To identify and quantify such AD-related changes in the brain, we employed a tandem mass tags approach coupled to high-resolution mass spectrometry. We compared the proteomes of frontal cortex from AD patients with corresponding age-matched brain samples. Liquid chromatography-mass spectrometry/MS analysis carried out on an Orbitrap Fusion Lumos Tribrid mass spectrometer led to identification of 8,066 proteins. Of these, 432 proteins were observed to be significantly altered (>1.5 fold) in their expression in AD brains. Proteins whose abundance was previously known to be altered in AD were identified including secreted phosphoprotein 1 (SPP1), somatostatin (SST), SPARC-related modular calcium binding 1 (SMOC1), dual specificity phosphatase 26 (DUSP26), and neuronal pentraxin 2 (NPTX2). In addition, we identified several novel candidates whose association with AD has not been previously described. Of the novel molecules, we validated chromogranin A (CHGA), inner membrane mitochondrial protein (IMMT) and RAS like proto-oncogene A (RALA) in an additional set of 20 independent brain samples using targeted parallel reaction monitoring mass spectrometry assays. The differentially expressed proteins discovered in our study, once validated in larger cohorts, should help discern the pathogenesis of AD.

Indexed as

ProteomicsAged, 80 and overAlzheimer DiseaseAutopsyBrainChromatography, High Pressure LiquidComputational BiologyFemaleGene Expression RegulationHumansLongitudinal StudiesMaleNeurofibrillary TanglesPrefrontal CortexProto-Oncogene MasTandem Mass SpectrometryMAS1 protein, humanProto-Oncogene MasTrypsinADneurodegenerationproteomeTMT

Identifiers

PMID32614981
PMCPMC7775912
OpenAlexW3038331806

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.