Evidence map›Paper›PMID 32614125›Full record

ArticleJournal of magnetic resonance imaging : JMRI2021

Denoising and Multiple Tissue Compartment Visualization of Multi-b-Valued Breast Diffusion MRI.

Ek T Tan, Lisa J Wilmes, Bonnie N Joe, Natsuko Onishi, Vignesh A Arasu, Nola M Hylton, Luca Marinelli, David C Newitt

Open access · greenAbstract read
In one paragraph

Article in Journal of magnetic resonance imaging : JMRI, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Diffusion MRI fiber diameter for muscle denervation assessment.Quantitative imaging in medicine and surgery · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Ek T TanGE Global Research, Niskayuna, New York, USA.ORCID 0000-0003-2847-9378
Lisa J WilmesDepartment of Radiology, University of California, San Francisco, California, USA.
Bonnie N JoeDepartment of Radiology, University of California, San Francisco, California, USA.
Natsuko OnishiDepartment of Radiology, University of California, San Francisco, California, USA.
Vignesh A ArasuDepartment of Radiology, University of California, San Francisco, California, USA.
Nola M HyltonDepartment of Radiology, University of California, San Francisco, California, USA.
Luca MarinelliGE Global Research, Niskayuna, New York, USA.
David C NewittDepartment of Radiology, University of California, San Francisco, California, USA.ORCID 0000-0002-1735-6682
University of California, San Francisco · USGE Global Research (United States) · USHospital for Special Surgery · USKaiser Permanente · US

Funding

Elimination of Instrumental Bias for Quantitative Diffusion Imaging in Clinical Oncology TrialsR01CA190299 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MALYARENKO, DARIYA I. · 2015 to 2025
$6.4M
Quantitative Imaging for Assessing Breast Cancer Response to TreatmentU01CA225427 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HYLTON-WATSON, NOLA M. · 2018 to 2022
$3.2M
Quantitative Imaging for Assessing Breast Cancer Response to TreatmentU01CA151235 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HYLTON-WATSON, NOLA M. · 2011 to 2015
$2.8M
National Institutes of Health (NIH) R01-CA190299National Institutes of Health (NIH) U01-CA151235NCI NIH HHS R01 CA190299NCI NIH HHS U01 CA151235NCI NIH HHS U01 CA225427
6 · The paper itself

Abstract

backgroundMulti-b-valued/multi-shell diffusion provides potentially valuable metrics in breast MRI but suffers from low signal-to-noise ratio and has potentially long scan times. PURPOSE: To investigate the effects of model-based denoising with no loss of spatial resolution on multi-shell breast diffusion MRI; to determine the effects of downsampling on multi-shell diffusion; and to quantify these effects in multi-b-valued (three directions per b-value) acquisitions. STUDY TYPE: Prospective ("fully-sampled" multi-shell) and retrospective longitudinal (multi-b). SUBJECTS: One normal subject (multi-shell) and 10 breast cancer subjects imaging at four timepoints (multi-b). FIELD STRENGTH/SEQUENCE: 3T multi-shell acquisition and 1.5T multi-b acquisition. ASSESSMENT: The "fully-sampled" multi-shell acquisition was retrospectively downsampled to determine the bias and error from downsampling. Mean, axial/parallel, radial diffusivity, and fractional anisotropy (FA) were analyzed. Denoising was applied retrospectively to the multi-b-valued breast cancer subject dataset and assessed subjectively for image noise level and tumor conspicuity. STATISTICAL TESTS: Parametric paired t-test (P < 0.05 considered statistically significant) on mean and coefficient of variation of each metric-the apparent diffusion coefficient (ADC) from all b-values, fast ADC, slow ADC, and perfusion fraction. Paired and two-sample t-tests for each metric comparing normal and tumor tissue.

resultsIn the multi-shell data, denoising effectively suppressed FA (-45% to -78%), with small biases in mean diffusivity (-5% in normal, +23% in tumor, and -4% in vascular compartments). In the multi-b data, denoising resulted in small biases to the ADC metrics in tumor and normal contralateral tissue (by -3% to +11%), but greatly reduced the coefficient of variation for every metric (by -1% to -24%). Denoising improved differentiation of tumor and normal tissue regions in most metrics and timepoints; subjectively, image noise level and tumor conspicuity were improved in the fast ADC maps. DATA

conclusionModel-based denoising effectively suppressed erroneously high FA and improved the accuracy of diffusivity metrics. EVIDENCE LEVEL: 3 TECHNICAL EFFICACY STAGE: 1.

Indexed as

BreastDiffusion Magnetic Resonance ImagingHumansMagnetic Resonance ImagingProspective StudiesReproducibility of ResultsRetrospective Studiesbreast imagingdenoisingdiffusion imaging

Identifiers

PMID32614125
PMCPMC8406040
OpenAlexW3040033660

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.