Evidence map›Paper›PMID 32613943›Full record

ArticleeLife2020

Evolution of a plant gene cluster in Solanaceae and emergence of metabolic diversity.

Pengxiang Fan, Peipei Wang, Yann-Ru Lou, Bryan J Leong, Bethany M Moore, Craig A Schenck, Rachel Combs, Pengfei Cao, Federica Brandizzi, Shin-Han Shiu and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Genome mining of metabolic gene clusters in the Rubiaceae family.Computational and structural biotechnology journal · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Trading acyls and swapping sugars: metabolic innovations inbioRxiv : the preprint server for biology · 2024
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Pengxiang FanDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, United States.ORCID 0000-0002-4560-3783
Peipei WangDepartment of Plant Biology, Michigan State University, East Lansing, United States.ORCID 0000-0002-7580-9627
Yann-Ru LouDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, United States.ORCID 0000-0002-4716-4323
Bryan J LeongDepartment of Plant Biology, Michigan State University, East Lansing, United States.ORCID 0000-0003-4042-1160
Bethany M MooreDepartment of Plant Biology, Michigan State University, East Lansing, United States.ORCID 0000-0002-2104-7292
Craig A SchenckDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, United States.ORCID 0000-0002-5711-7213
Rachel CombsDivision of Biological Sciences, University of Missouri, Columbus, United States.ORCID 0000-0001-6626-0903
Pengfei CaoDepartment of Plant Biology, Michigan State University, East Lansing, United States.ORCID 0000-0001-6998-9302
Federica BrandizziDepartment of Plant Biology, Michigan State University, East Lansing, United States.ORCID 0000-0003-0580-8888
Shin-Han ShiuDepartment of Plant Biology, Michigan State University, East Lansing, United States.ORCID 0000-0001-6470-235X
Robert L LastDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, United States.ORCID 0000-0001-6974-9587
Michigan State University · USUniversity of Missouri · USUniversity of Wisconsin–Madison · US

Funding

Plant Biotechnology for Health and SustainabilityT32GM110523 · NIGMS · MICHIGAN STATE UNIVERSITY · PI LAST, ROBERT LOUIS · 2014 to 2023
$2.2M
National Science Foundation 1546617National Science Foundation 1655386National Science Foundation 1727362National Science Foundation 1757043National Science Foundation 1811055NIGMS NIH HHS T32 GM110523U.S. Department of Energy BER DE-SC0018409
6 · The paper itself

Abstract

Plants produce phylogenetically and spatially restricted, as well as structurally diverse specialized metabolites via multistep metabolic pathways. Hallmarks of specialized metabolic evolution include enzymatic promiscuity and recruitment of primary metabolic enzymes and examples of genomic clustering of pathway genes. Solanaceae glandular trichomes produce defensive acylsugars, with sidechains that vary in length across the family. We describe a tomato gene cluster on chromosome 7 involved in medium chain acylsugar accumulation due to trichome specific acyl-CoA synthetase and enoyl-CoA hydratase genes. This cluster co-localizes with a tomato steroidal alkaloid gene cluster and is syntenic to a chromosome 12 region containing another acylsugar pathway gene. We reconstructed the evolutionary events leading to this gene cluster and found that its phylogenetic distribution correlates with medium chain acylsugar accumulation across the Solanaceae. This work reveals insights into the dynamics behind gene cluster evolution and cell-type specific metabolite diversity.

Indexed as

Evolution, MolecularConserved SequenceGenes, PlantGenetic VariationMetabolic Networks and PathwaysMultigene FamilySolanaceaeSolanumTrichomesbiochemistrychemical biologyplant biologySolanum lycopersicumSolanum pennelliiSolanum quitoense

Identifiers

PMID32613943
PMCPMC7386920
OpenAlexW3040640744

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.