Evidence map›Paper›PMID 32610441›Full record

ArticleInternational journal of molecular sciences2020

Martini Coarse-Grained Model of Hyaluronic Acid for the Structural Change of Its Gel in the Presence of Monovalent and Divalent Salts.

Raj Kumar, Young Kyu Lee, Yong Seok Jho

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A One-Bead-Per-Saccharide (1BPS) Model for Glycosaminoglycans.Journal of chemical theory and computation · 2023
    Article
  5. Article
  6. Review
  7. The Physical Chemistry and Chemical Physics (PCCP) Section of theInternational journal of molecular sciences · 2021
    Article
  8. The Martini Model in Materials Science.Advanced materials (Deerfield Beach, Fla.) · 2021
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Raj KumarDepartment of Physics and Research Institute of Natural Science, Gyeongsang National University (GNU), 501 Jinju-daero, Jinju 52828, Korea.
Young Kyu LeeDepartment of Physics and Research Institute of Natural Science, Gyeongsang National University (GNU), 501 Jinju-daero, Jinju 52828, Korea.
Yong Seok JhoDepartment of Physics and Research Institute of Natural Science, Gyeongsang National University (GNU), 501 Jinju-daero, Jinju 52828, Korea.
Gyeongsang National University · KR

Funding

National Research Foundation of Korea 2018M3D1A1058624National Research Foundation of Korea 2018R1A2B6006262
6 · The paper itself

Abstract

Hyaluronic acid (HA) has a wide range of biomedical applications including the formation of hydrogels, microspheres, sponges, and films. The modeling of HA to understand its behavior and interaction with other biomolecules at the atomic level is of considerable interest. The atomistic representation of long HA polymers for the study of the macroscopic structural formation and its interactions with other polyelectrolytes is computationally demanding. To overcome this limitation, we developed a coarse grained (CG) model for HA adapting the Martini scheme. A very good agreement was observed between the CG model and all-atom simulations for both local (bonded interactions) and global properties (end-to-end distance, a radius of gyration, RMSD). Our CG model successfully demonstrated the formation of HA gel and its structural changes at high salt concentrations. We found that the main role of CaCl

Indexed as

Computer SimulationGelsHyaluronic AcidModels, TheoreticalMolecular Dynamics SimulationProteinsSaltsSolventsStatic ElectricityThermodynamicsGelsHyaluronic AcidProteinsSaltsSolventscoarse-grained simulationgel formationhyaluronic acidMartini

Identifiers

PMID32610441
PMCPMC7370153
OpenAlexW3037067876

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.