Evidence map›Paper›PMID 32609773›Full record

ArticlePloS one2020

Genetic evidence that Chinese chestnut cultivars in Japan are derived from two divergent genetic structures that originated in China.

Sogo Nishio, Shuan Ruan, Yutaka Sawamura, Shingo Terakami, Norio Takada, Yukie Takeuchi, Toshihiro Saito, Eiich Inoue

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sogo NishioInstitute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki, Japan.ORCID 0000-0003-3595-3939
Shuan RuanLiaoning Institute of Economic Forestry, Dalian, Liaoning, China.
Yutaka SawamuraInstitute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki, Japan.
Shingo TerakamiInstitute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki, Japan.
Norio TakadaInstitute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki, Japan.
Yukie TakeuchiInstitute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki, Japan.
Toshihiro SaitoInstitute of Fruit Tree and Tea Science, NARO, Tsukuba, Ibaraki, Japan.
Eiich InoueCollege of Agriculture, Ibaraki University, Ami-machi, Ibaraki, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Chinese chestnut (Castanea mollissima Bl.) was introduced into Japan about 100 years ago. Since then, a number of Chinese chestnut cultivars and Japanese-Chinese hybrid cultivars have been selected by farmers and plant breeders, but little information has been available about their origins and genetic relationships. A classification based on simple sequence repeat markers was conducted using 230 cultivars including Japanese chestnut (Castanea crenata Sieb. et Zucc.) cultivars originated in Japan, Japanese-Chinese hybrid cultivars, and Chinese chestnut cultivars originated in both Japan and China. First, a search for synonyms (cultivars with identical genotypes) revealed 23 synonym groups among the Chinese chestnut cultivars, and all but one cultivar from each synonym group was omitted from further analyses. Second, genetic structure analysis showed a clear division between Japanese and Chinese chestnut, and most of the Japanese and Chinese cultivars had a simple genetic structure corresponding to the expected species. On the other hand, most Japanese-Chinese hybrid cultivars had admixed genetic structure. Through a combination of parentage and chloroplast haplotype analyses, 16 of the 18 hybrid cultivars in this study were inferred to have parent-offspring relationships with other cultivars originated in Japan. Finally, Bayesian clustering and chloroplast haplotype analysis showed that the 116 Chinese chestnut cultivars could be divided into two groups: one originated in the Hebei region of China and the other originated in the Jiangsu and Anhui regions of China. The Chinese chestnut cultivars selected in Japan showed various patterns of genetic structure including Hebei origin, Jiangsu or Anhui origin, and admixed. The chestnut cultivar genetic classifications obtained in this study will be useful for both Japanese and Chinese chestnut breeding programs.

Indexed as

ChinaChloroplastsFagaceaeGenetic DriftGenotypeJapanMicrosatellite RepeatsPhylogenyPlant Breeding

Identifiers

PMID32609773
PMCPMC7329096

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.