Evidence map›Paper›PMID 32609561›Full record

ArticleThe journal of histochemistry and cytochemistry : official journal of the Histochemistry Society2020

Novel In Situ Hybridization and Multiplex Immunofluorescence Technology Combined With Whole-slide Digital Image Analysis in Kidney Transplantation.

Henrik Junger, Dejan Dobi, Adeline Chen, Linda Lee, Joshua J Vasquez, Qizhi Tang, Zoltan G Laszik

Open access · greenAbstract read
In one paragraph

Article in The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Extrahepatic Bile Duct Organoids as a Model to Study Ischemia/Reperfusion Injury During Liver Transplantation.Transplant international : official journal of the European Society for Organ Transplantation · 2024
    Article
  2. Article
  3. Article
  4. Spatial transcriptomics and the kidney.Current opinion in nephrology and hypertension · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Henrik JungerDepartment of Pathology, University of California, San Francisco, CA.
Dejan DobiDepartment of Pathology, University of California, San Francisco, CA.
Adeline ChenDepartment of Pathology, University of California, San Francisco, CA.
Linda LeeDepartment of Surgery, University of California, San Francisco, CA.
Joshua J VasquezDepartment of Medicine, University of California, San Francisco, CA.
Qizhi TangDepartment of Surgery, University of California, San Francisco, CA.
Zoltan G LaszikDepartment of Pathology, University of California, San Francisco, CA.
University of California, San Francisco · US

Funding

The impact of the HIV reservoir on pulmonary myeloid cells: virology, phenotype, and functionK01HL140804 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VASQUEZ, JOSHUA · 2019 to 2023
$956k
NHLBI NIH HHS K01 HL140804NIMHD NIH HHS L32 MD010903
6 · The paper itself

Abstract

The elusive nature of assessing immunological processes in situ in organ transplantation is one of the major impediments to improve diagnostics and treatment. Here, we present a proof-of-concept study using multiplexed in situ hybridization (ISH) (RNAscope) to detect low-abundance cytokines in formalin-fixed paraffin-embedded (FFPE) human transplant kidney biopsies in combination with immunofluorescence (IF) for cell phenotyping. We show that a multiplex IF and ISH (mIFISH) assay is feasible to identify the cellular source of cytokines and chemokines (tumor necrosis factor-α, interferon-γ, and CXCL9) in FFPE transplant kidney biopsies and that quantification of the mRNA and protein signal is also possible at single-cell resolution in the context of tissue complexity. Furthermore, the mIFISH assay allows precise quantitative assessment of tubulitis, one of the key morphological correlates of alloimmune injury. Simultaneous in situ identification and quantification of multiple cellular phenotypes and mRNA expression of proinflammatory cytokines in FFPE tissues offer a novel insight into the biology of alloimmune injury in kidney transplantation and may contribute to improved diagnostic accuracy and patient care.

Indexed as

Kidney TransplantationMolecular ImagingBiopsyFluorescent Antibody TechniqueHumansIn Situ HybridizationKidneyLeukocyte Common AntigensParaffin EmbeddingTissue FixationLeukocyte Common Antigensacute cellular rejectionkidney transplantationmIFISHwhole-slide digital image analysis

Identifiers

PMID32609561
PMCPMC7350082
OpenAlexW3039910131

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.