Evidence map›Paper›PMID 32608180›Full record

ArticleChembiochem : a European journal of chemical biology2020

Human Cellular Retinol Binding Protein II Forms a Domain-Swapped Trimer Representing a Novel Fold and a New Template for Protein Engineering.

Alireza Ghanbarpour, Elizabeth M Santos, Cody Pinger, Zahra Assar, Seyedmehdi Hossaini Nasr, Chrysoula Vasileiou, Dana Spence, Babak Borhan, James H Geiger

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Photoisomerization detected in a fully wavelength-tunable rhodopsin mimic system.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Alireza GhanbarpourDepartment of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI 48824, USA.
Elizabeth M SantosDepartment of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI 48824, USA.
Cody PingerDepartment of Biomedical Engineering, Michigan State University, 775 Woodlot Drive, East Lansing, MI 48823, USA.
Zahra AssarCayman Chemical, 1180 East Ellsworth Road, Ann Arbor, MI 48108, USA.
Seyedmehdi Hossaini NasrDepartment of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI 48824, USA.
Chrysoula VasileiouDepartment of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI 48824, USA.
Dana SpenceDepartment of Biomedical Engineering, Michigan State University, 775 Woodlot Drive, East Lansing, MI 48823, USA.
Babak BorhanDepartment of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI 48824, USA.
James H GeigerDepartment of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI 48824, USA.ORCID 0000-0002-9443-4488
Michigan State University · USBluestar Silicones (France) · FRCayman Chemical (United States) · USYale University · US

Funding

Protein/Chromphore Interactions via Protein Design: Interrogation and ApplicationR01GM101353 · NIGMS · MICHIGAN STATE UNIVERSITY · PI BORHAN, BABAK, GEIGER, JAMES H · 2013 to 2022
$2.6M
NIGMS NIH HHS R01 GM101353
6 · The paper itself

Abstract

Domain-swapping is a mechanism for evolving new protein structure from extant scaffolds, and has been an efficient protein-engineering strategy for tailoring functional diversity. However, domain swapping can only be exploited if it can be controlled, especially in cases where various folds can coexist. Herein, we describe the structure of a domain-swapped trimer of the iLBP family member hCRBPII, and suggest a mechanism for domain-swapped trimerization. It is further shown that domain-swapped trimerization can be favored by strategic installation of a disulfide bond, thus demonstrating a strategy for fold control. We further show the domain-swapped trimer to be a useful protein design template by installing a high-affinity metal binding site through the introduction of a single mutation, taking advantage of its threefold symmetry. Together, these studies show how nature can promote oligomerization, stabilize a specific oligomer, and generate new function with minimal changes to the protein sequence.

Indexed as

Protein EngineeringCrystallography, X-RayHumansModels, MolecularProtein ConformationProtein FoldingRetinol-Binding Proteins, CellularRetinol-Binding Proteins, Cellulardomain-swapped trimershuman cellular retinol binding protein IImetalloproteinsprotein engineering

Identifiers

PMID32608180
PMCPMC8220890
OpenAlexW3040075136

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.