ArticleGenes2020
Identification of QTNs and Their Candidate Genes for 100-Seed Weight in Soybean (Glycine max L.) Using Multi-Locus Genome-Wide Association Studies.
Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- A fast method for breeding by design via G × E interactions detected in large-scale climatic, phenomic and genomic data.National science review · 2026Article
- Nanoparticle-modified fishpond sediments improve metal immobilization, redox homeostasis, and stress tolerance inFrontiers in plant science · 2026Article
- Identification of Novel Genetic Loci Related to 100-Seed Weight in the Korean Soybean Core Collection Using a Genome-Wide Association Study.International journal of molecular sciences · 2025Article
- Image-based GWAS identifies the genetic architecture of seed-related traits in a soybean mutant population.Molecular breeding : new strategies in plant improvement · 2025Article
- Genome-wide association study reveals the QTLs and candidate genes associated with seed longevity in soybean (Glycine max (L.) Merrill).BMC plant biology · 2025Article
- Integration of GWAS and transcriptome and haplotype analyses to identify QTNs and candidate genes controlling oil content in soybean seeds.Scientific reports · 2025Article
- GWAS analysis revealed genomic loci and candidate genes associated with the 100-seed weight in high-latitude-adapted soybean germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Genome-Wide Association for Morphological and Agronomic Traits inPlants (Basel, Switzerland) · 2024Article
- Insights into the genetic architecture of Phytophthora capsici root rot resistance in chile pepper (Capsicum spp.) from multi-locus genome-wide association study.BMC plant biology · 2024Article
- Identification of the domestication gene GmCYP82C4 underlying the major quantitative trait locus for the seed weight in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Uncovering the transcriptional responses of tobacco (Nicotiana tabacum L.) roots to Ralstonia solanacearum infection: a comparative study of resistant and susceptible cultivars.BMC plant biology · 2023Article
- Linkage and association mapping of ovule number per ovary (ON) in oilseed rape (Molecular breeding : new strategies in plant improvement · 2023Article
- Identification of major genomic regions for soybean seed weight by genome-wide association study.Molecular breeding : new strategies in plant improvement · 2022Article
- Genome-wide identification and development of InDel markers in tobacco (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Comprehensive transcriptome analysis reveals heat-responsive genes in flowering Chinese cabbage (Frontiers in plant science · 2022Article
- Genome-wide Association Study for Yield and Yield-Related Traits in Diverse Blackgram Panel (Frontiers in genetics · 2022Article
- Domestication and improvement genes reveal the differences of seed size- and oil-related traits in soybean domestication and improvement.Computational and structural biotechnology journal · 2022Article
- Identification of QTNs and their candidate genes for flowering time and plant height in soybean using multi-locus genome-wide association studies.Molecular breeding : new strategies in plant improvement · 2021Article
- Identification of Novel Quantitative Trait Nucleotides and Candidate Genes for Bacterial Wilt Resistance in Tobacco (Frontiers in plant science · 2021Article
- Genome-Wide Association Study Identifies Genomic Regions for Important Morpho-Agronomic Traits in Mesoamerican Common Bean.Frontiers in plant science · 2021Article
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7 authors.
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Abstract
100-seed weight (100-SW) in soybeans is a yield component trait and controlled by multiple genes with different effects, but limited information is available for its quantitative trait nucleotides (QTNs) and candidate genes. To better understand the genetic architecture underlying the trait and improve the precision of marker-assisted selection, a total of 43,834 single nucleotide polymorphisms (SNPs) in 250 soybean accessions were used to identify significant QTNs for 100-SW in four environments and their BLUP values using six multi-locus and one single-locus genome-wide association study methods. As a result, a total of 218 significant QTNs were detected using multi-locus methods, whereas eight QTNs were identified by a single-locus method. Among 43 QTNs or QTN clusters identified repeatedly across various environments and/or approaches, all of them exhibited significant trait differences between their corresponding alleles, 33 were found in the genomic region of previously reported QTLs, 10 were identified as new QTNs, and three (qHSW-4-1, qcHSW-7-3, and qcHSW-10-4) were detected in all the four environments. The number of seed weight (SW) increasing alleles for each accession ranged from 8 (18.6%) to 36 (83.72%), and three accessions (Yixingwuhuangdou, Nannong 95C-5, and Yafanzaodou) had more than 35 SW increasing alleles. Among 36 homologous seed-weight genes in Arabidopsis underlying the above 43 stable QTNs, more importantly, Glyma05g34120, GmCRY1, and GmCPK11 had known seed-size/weight-related genes in soybean, and Glyma07g07850, Glyma10g03440, and Glyma10g36070 were candidate genes identified in this study. These results provide useful information for genetic foundation, marker-assisted selection, genomic prediction, and functional genomics of 100-SW.
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